AMCG00021600 (twist1)


Basic Information

Item Value
gene id AMCG00021600
gene name twist1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22587333 ~ 22588802 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021600
ATGTTTGAAGACATGATGCAGGACGAGTCGAGCTCCCCGGTGTCTCCAGTGGACAGCCTGAGCAACAGTGAAGAAGAACTCGACAGGCAACAGAAAAGATGTGGGAGGAAAAGGAGACCGAGCAGGAAAAATGGGGAGGATTCAGATAGCCCTACCCCtgggaaaagaggaaaaaagtccagcagcagcagcccgcAGTCTTTCGAGGAGCTGCAGACCCAGAGAGTCATGGCCAACGTGCGGGAGCGCCAGAGGACGCAGTCCCTCAACGAAGCTTTCGCCGCTTTACGGAAAATCATTCCCACCCTGCCTTCAGACAAACTGAGTAAGATTCAGACGCTCAAACTGGCAGCCAGGTACATCGATTTCCTCTACCAAGTACTACAGAGCGATGAGCTGGACTCCAAAATGGCAAGTTGTAGTTATGTGGCTCATGAAAGACTAAGCTATGCCTTTTCTGTGACAACTGGTTTTCATTTACCTATCCCAAACGGGGACTCTGGAGTCTGAAGCTGGATTTGTACAAAGCAgcgttttttggggggtggaaaatatgaaaatatagaaAGCCAAGAGGACAGGGCGAGAGGAGCACTTACAGGAAAAAAAGGCCATTTGGACACTGAACAATCATTCTGACCTGTGTTTGAAACGTTTCTGTTTGACGATGAATGTTGGACATTTATTTCTCTATGCATGCCTTTGACCAGCCGTGCCTACTTTGTATGAAGAGGGAGATGGATTTAAGATGGCCTTTTTTTAAGCTAGGCTGTCGAGGAAAACTGTTCTAGccataaacatattttgaacCTTGGCTCATACCTGTGCAAACCTttataggttttttttaattattattattttctgaaatacattttatttatttattgatgaccCATGTTACGATGCAGAATAGATCCGGTGTCTACATGCattcttatttttatgattgtgtTGTAAATaactttgtatatttttctgcaataaaatacatatgatTTTTAAACGTAAACAGACA

Function

symbol description
twist1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and bHLH transcription factor binding activity. Involved in several processes, including animal organ development; regulation of cellular response to stress; and regulation of gene expression. Located in nucleus. Implicated in Saethre-Chotzen syndrome; Sweeney-Cox syndrome; acrocephalosyndactylia; and craniosynostosis. Biomarker of pulmonary fibrosis.

NR:

description
PREDICTED: twist-related protein 2 isoform X1

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021600 True 1018 mRNA 0.43 2 22587333 22588802

Neighbor

gene id symbol gene type direction distance location
AMCG00021594 snx13 coding downstream 150451 22414264 ~ 22436882 (-)
AMCG00021592 agr2 coding downstream 280906 22303644 ~ 22306427 (-)
AMCG00021588 ankmy2,LOC102794045 coding downstream 340531 22242229 ~ 22246802 (-)
AMCG00021589 NA coding downstream 345645 22240700 ~ 22241688 (-)
AMCG00021586 sostdc1 coding downstream 356149 22228224 ~ 22231184 (-)
AMCG00021601 ferd3l coding upstream 6828 22595630 ~ 22596109 (-)
AMCG00021598 NA coding upstream 45902 22634704 ~ 22638390 (-)
AMCG00021599 tmem196,LOC107655099,LOC107571147,LOC107755951 coding upstream 55590 22644392 ~ 22649062 (-)
AMCG00021597 NA coding upstream 84741 22673543 ~ 22682139 (-)
AMCG00021603 sp8,sp8b,LOC101158882 coding upstream 134137 22722939 ~ 22724339 (-)
G86997 NA non-coding downstream 399193 22130806 ~ 22188140 (-)
G86925 NA non-coding downstream 802199 21784876 ~ 21785134 (-)
G86893 NA non-coding downstream 1071099 21516032 ~ 21516234 (-)
G86881 NA non-coding downstream 1293430 21291373 ~ 21293903 (-)
G86850 NA non-coding downstream 1396401 21189839 ~ 21190932 (-)
G87092 NA non-coding upstream 39797 22628599 ~ 22628891 (-)
G87116 NA non-coding upstream 101806 22690608 ~ 22690889 (-)
G87181 NA non-coding upstream 418592 23007394 ~ 23014782 (-)
G87193 NA non-coding upstream 486832 23075634 ~ 23076015 (-)
G87203 NA non-coding upstream 500800 23089602 ~ 23091111 (-)
AMCG00021569 NA other downstream 916018 21666402 ~ 21671315 (-)
G86808 NA other downstream 1503763 21063858 ~ 21083570 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other downstream 1862453 20721884 ~ 20724880 (-)
G86649 NA other downstream 2189550 20395612 ~ 20397783 (-)
G86640 NA other downstream 2227078 20358301 ~ 20360255 (-)
AMCG00021619 NA other upstream 566385 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 740523 23329325 ~ 23332968 (-)
G87263 NA other upstream 749449 23338251 ~ 23338484 (-)
AMCG00021634 NA other upstream 906223 23495025 ~ 23498761 (-)
AMCG00021662 NA other upstream 1610734 24199536 ~ 24210205 (-)

Expression


Co-expression Network