AMCG00021675 (LOC107716986)


Basic Information

Item Value
gene id AMCG00021675
gene name LOC107716986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24766785 ~ 24802333 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021675
ATGATGGATCATCTCAGCGATTCCTGCCATGGGAAGGAGAACTGTGAGATGCCCAACAGTATTGGAGATCCCAAGGGACCTCCAGCCAAGATCGCTCGCTTGGAGCAGAATGGGAGTCCACTAGGAAGGAGCCGTTTGGGGAGCACAGGGACAAAACTCGCTGGAGTGTCTCTGAAACCTACTGGGCACTTAATGAAAACGTGTCATAAGAGAGGGAACATGCTTCCAGTGTTTTGTGTGGTTGAGCATTATGAAAGTCCCATTGAATTCGATAGCAAAGAGGAGCATGCAGAGTTTGTGTTGGTGAGAAAGGACATGCTCTTCAACCAACTAATTGAAATGGCTCTGCTTTCCCTCGGATATTCCCACAGTTCTGCAGCTCAGGCAAAAGGCCTAATCCAGGTTGGAAAGTGGAATCCAGTCCCCCTCTCCTATGTGACAGACGCACCGGACGCCACAGTGGCTGACATGCTGCAGGATGTGTATCATGTGGTCACGCTGAAAATTCAGTTACACAGTTGCCCTAAACTGGAAGACTTGCCTCCTGAACAGTGGACACATTCCACAGTAAGAAATGCCCTCAAGGAGTTACTGAAAGACATGAACCAGAGCTCATTGGCTAAAGAATGTCCCCTGTCACAGAGTATGATTTCTTCCATTGTGAACAGCACTTACTATGCAAATGTCTCAGCAGCAAAATGTCAGGAATTCGGGCGGTGGTATAAACATTTCAAGAAGACAAAAGATATGATGGTAGCTTGCCAGCCCTCCCAGCTGGAGGGATACCTCGGATCATGCATTCTCCACGACAGTCCGAGAGCCACAGCAGTAGCCGAAATGGAAAGCCTGTCGGACCTGTCTCCGCCGGGCGCTAACCATGTGAATTTTAGCCAGCAGCCCATTCCCGGCAACACCGCCGAACAGCCGCCTTCCCCGGTACAGCTTCCCCACGGAGGCCAACCCTCGGTCCGGGCCCAGCTGCCCAGCCTGCACCCTGGTCTCGTGTCCACTCCCATCAGCCCCCAGCTGGTCAACCAGCAGATCGTGATGGCCCAGATCTTGAACCAGCAGTATGCAGTGAACAGACTCTTAGCTCAGCAGTCCCTCAGCCAGCAGTACCTAAATCACCCGCCGGTCAACCGCTCTCTTAACAAGCCCCTGGAACAGCAGGTCTCATCCAACACAGAGGTGTCTTCTGAAATCTACCAGTGGGTGCGCGATGAGCTCAAGAGGGCCGGGATCTCCCAGGCAGTGTTCGCCCGTGTGGCTTTCAACAGGACTCAGgGCTTGCTCTCAGAAATCCTCCGAAAGGAAGAGGACCCCAAGACTGCCTCTCAGTCTCTGCTGGTCAACCTGAGGGCAATGCAGAACTTCCTGCAGCTGCCAGAGGCAGAAAGGGACCGAATCTACCAGGATGAGCGGGAGAGAAGTCTGACCGCTGCTTCAGCCATGGGACCTACGCCTCTTATAAGCACGCCTCCTAACCGTCCTGTGCAGGTGAAACCATCTCCAATCCCCACAGAAAGGAATGGCAAAACGGACAGCTGTGTCTTGAATATTAATGCTTCCATTTACGATGAGATTCAGCAGGAAATGAAGAGGGCTAAAGTGTCCCAGGCCCTGTTTGCGAAGGTTGCCGCCTCAAAAAGTCAGATAAAAACCGACCCCAGACGATACGACCGGTGGTTCATAGATTTCCAAAATCTCCAGCAGCACGGTTGGTTGTGTGAGCTACTCCGCTGGAAGGAGGACCCCTCTCCTGAGAACAGGACCCTGTGGGAGAATCTCTCCATGATCCGCCGATTTCTGAGTCTTCCCCAGGCTGAACGAGATGCCATCTATGAGCAGGAGAGCAACGCCAGCCAGCACCACATAGACCGGCCTCCCCATATGATGCACGTTCCCACGGATCCTCTGCAGACAGAAAAGGCTGCGTCGCCCGAGGAAAAAACAAGTTTTGTGTTCTTATCGAATGGCAATGACTGGACTTTCAATGCTCTTTTCAAAAAGCATAGCTTCATCCAAGACGTTGGCCTGTACCCTGACGAGGAGGCCATTCAGACTCTCTCGGCACAGTTAGACTTGCCCAAGTACACCATCATCAAGTTCTTTCAAAACCAGCGTTTCTACGTGAACCACTACGGGAAGCTGAAGGACAATTCCGGGGTGGACGTGGTGGATGTGGCCGAGTATAAGGAAGACGAGCTGCTCAAGGACTTGGAAGAAAGCACCCAGACTAACAGTACAATTTTTTCCATTAAGATAGAGGAGCACTTGTCAGGGGAAGGCAATTCGGAGTCCGACTCTGAATCTaaaaattag

Function

NR:

description
PREDICTED: DNA-binding protein SATB1-like

GO: NA

KEGG:

id description
K23225 SATB1; DNA-binding protein SATB1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021675 True 2322 mRNA 0.52 13 24766785 24802333

Neighbor

gene id symbol gene type direction distance location
AMCG00021674 NA coding downstream 157326 24594897 ~ 24609459 (-)
AMCG00021673 NA coding downstream 198605 24553017 ~ 24568180 (-)
AMCG00021670 NA coding downstream 321547 24436207 ~ 24445238 (-)
AMCG00021669 NA coding downstream 354337 24382037 ~ 24412448 (-)
AMCG00021667 NA coding downstream 397662 24366725 ~ 24369123 (-)
AMCG00021677 NA coding upstream 172935 24975268 ~ 24986960 (-)
AMCG00021679 NA coding upstream 205357 25007690 ~ 25012760 (-)
AMCG00021680 LOC104951919 coding upstream 272014 25074347 ~ 25085082 (-)
AMCG00021681 NA coding upstream 400071 25202404 ~ 25203901 (-)
AMCG00021686 nkiras1,LOC106588667 coding upstream 604369 25406702 ~ 25411562 (-)
G87573 NA non-coding downstream 218662 24546082 ~ 24548123 (-)
G87495 NA non-coding downstream 487398 24278637 ~ 24279387 (-)
G87428 LOC103376870 non-coding downstream 633474 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 689678 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 1278573 23482972 ~ 23488212 (-)
G87627 NA non-coding upstream 185109 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 186068 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 610071 25412404 ~ 25460562 (-)
G87707 NA non-coding upstream 729140 25531473 ~ 25531759 (-)
G87717 NA non-coding upstream 855049 25657382 ~ 25657793 (-)
AMCG00021668 NA other downstream 403326 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 556580 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 1268024 23495025 ~ 23498761 (-)
G87263 NA other downstream 1428301 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 1433817 23329325 ~ 23332968 (-)
G87674 NA other upstream 601317 25403650 ~ 25406538 (-)
G87806 NA other upstream 1103111 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1288894 26091227 ~ 26105391 (-)
G87871 NA other upstream 1349772 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 1871745 26674078 ~ 26718508 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000086_00247732_00293880 SATB1 coding CI01000086 null 247732 ~ 293880 (-)