G83862


Basic Information

Item Value
gene id G83862
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6569179 ~ 6636907 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104619
AATTGTACACAGACGGCTTCTCTCTAACTACCTGTGCAAACATGTATAGACTCTCCTTTCAGCCACAATCATTGTGGCAGTTGCAAGATAATATAGCAATACATATGACTagctatatattaaaaaaaaaacatggaataactacataaaatgcatttgtttaggTTGAAGACTTAGtgtatttggaaaataaagGAGCAGACAAATGCGGACAAAAAAGGATACATCTTTCCAGGTTTTTCATAAAACTGTATCATGTGACCCTTACGAAGTCCCAATTAACGCCAGTGTATGCCGATTCAACTCGGCAAAGACGCTTTTGTTAGCAGACTGCAGACTGTGAAGCGGCttacaacaaaaaagaaagcaatcCCTGTCAATACCTTCGGTGACAGTGGCTTAATTAGAGAAGGCTTTTCCTCGAACTATAGGTTGGGACCGAATTCATAAGCTGTGACAGGGACAGTGTGAGGGTTCTCTGAGGCTAAGACAAGGTTTGCAGCAGTGAGGTAAAATGTGGATGGGAATGACATGCTATAAAGTATTATAAAAACCAAAGagataaaatgtacaaaaggtAGACCTGAGGTAGATCTATCCACTAACACATTCTCTAAAGACACTAGCACGTGTCAAATGAAGGAAGGGTACAGCACCAAGCCATCACACTACCACTAGAGGTGCGAACTTTGAGAACAGAGCAGAGACACAAGTGCCACTGGTGTGTTGGTCACAGTGATACAGTCTTGTAACAGCAGGATGTGATGATGTGTAGGCCTAGTCTCCACACTCCTGCACCTCCGTGCGTATTCCTGGCATTCTACGatctaatataattatattttttcttctcaatttGCAAAACTGCATTCATTCACACACAATCTGCATTGGCCCATTGCAGAATATTCCAATGAGAAGTGCAACAATATCTACCACTGCAAACATATCACTCATACTGAAGAAAGAAGAACTAACTCTGGTGGTGTGTAATTAAGTGGGCCTTTTAGCATggccaaataaacaaacaagctttTTTAATCAGTATTACACAGCCTGATTAGAAAATGTAGCCTCTTCTGACACTAGCCTAAAAGGTCAAGGTGCATTTCATGGCATATACAGTTAGAGTCtaaacttcaattaaacaaCAAAGTAGCCCACTAAAGAAAAATGCATCCTGCACAAAGCCACagtggttttgtattttgattgaCATATTCATATGAACTCTTTCTTGATTCAAACCTGCTTCCGTTAAAGATTTCTCATCAAATTGTTGGTACAGAACATTCTACCACTACATTTCACTCCTGTACCCTACAGGTTTCTGGATACACTACACCCCAACAACGCTGTGTGATAATACTGATCAAATGACAAACTCTGgtaatataataatcattaaaaaaaatatccttgcattatattttgattaaaagaaaaccacacatgctttaaaaaaagtcaGGATTTACTAATGATAAAcagcaagaaaacattttgctttactttcactacaaataaatatatattttttaaatgcaacccTCTGTGACATTAAATTGATTATCATATGCAAGCATTAGTTTCATCAACAATGACCTTCCAGAAATAAGGAATATCATTCTAATTTAAATTCCATTTCACACAAACTAGGCATTGATATGATGCGTTAGAATTTGTTCCAGTATTTCTAAcgaaggaaaagaaagaaatcagtTTCAATGGATGTCAGCAACTTTGGAATGACTACATAgtaactataaaaaaaatagaagaacaaTTTTTGCTTGTGCAAAGCAAGGCAAATAACCACTAGCAACAGCCAGGCACTGTGGGaagtatgaattaaaaatacaagcaCTGTAAACACAGTCCAGTTCTGACCTGAATAGTACTTACAGTAAGTATGAAAGAACTGAACTACATGGTGGCCCTGTGCAAGAGGATCCACCGATACAACCAAACTAAATTTTGAAGATTATGCATCTTAAGTGTATTAATGTACTAtaacacacactcgcacacattATAGATGTACATATATTgtcataaaaacaaacttatttcaattaaatgaaatatataacCAATTATAAGggagtaaaataaacaaaaacaaaatcaggcgGTAATTAATAATGTCTACCAAACTCTAgcaaataatgtatgtatgctATTATATACATCTAGAATTTGTCATTATAATtaagattaatacaaaataaatgcgtGTTTGGTACACATTGCTATTTACAGCagtttgtaaatatgtaatttttggAGTCCTGAGGGATTCTATATAGAGCTTACGTATTAAATATTTCCTGCCTTTGGTTTTATACTACATTACAATGCAGAAAGATCTTAAGTGAGCTTAAAgtaatttttcacatttgtttcctTCCTCAATTAAAAATGGAATCGGTTAATCACATTAACTATTATAGCgcaaaatcataaataatggGTTACCCAGATATCTCAATTCACTGCTAAGAGTGGGTGGAATTAAGCTGAAAACAACTCTTCTGTATATAGCAAAGCTCTGAAACCCACAGCAGGTTATGCTGAGCAATGAAAGTTAGAAATGAGGATGCTAACTTTCACACATAACAAACACCTGATACATGCGCTTCATTTTGAGTGTACTGGCAGAAaggaggggaaaataaatgaatcctcTTCTTCATCTGGAGTGAAAGCCTTGGAGCGGACTGGCCCGGTTCCCCACGCCTCGCACCAAGGTGTGCAGAATTACAGGGGCAGTCAGTACCGCGTCGCGCCTCTGGGGTGTCATAGCATTTCCTCGTCGCAGCGGCCACCCGCCACCAGCAGCGAGTGCTTGTCGGGCTCACTCAGTGCCATGCTGTTGAGGGAGCGCTTGTCGGACCTCAGGGAGTTTATGGAGGCCCGGCTGTAGTTGACGATGCGGTCCAGGAGGCTGAGCTTGGGGGATTCGCGGCGGTTCTCGTCAATGCCGATGTGGATGCTGATGTCAGAGAGGCTGTTCTGGCGGGCCTGGCCCTGGAGACGCGCTTCCAGCTTCTCAGCAGTGGGTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104619 True 3068 lncRNA 0.39 2 6569179 6636907

Neighbor

gene id symbol gene type direction distance location
AMCG00021135 NA coding downstream 26877 6538542 ~ 6542302 (-)
AMCG00021136 NA coding downstream 119007 6449423 ~ 6450172 (-)
AMCG00021134 LOC100697681,LOC101472898,LOC102787112,LOC102308013,LOC102213142 coding downstream 147441 6397628 ~ 6421738 (-)
AMCG00021125 fam199x,LOC100194523 coding downstream 1831965 4728373 ~ 4737214 (-)
AMCG00021122 LOC106604955,LOC106611984 coding downstream 2103521 4463840 ~ 4465658 (-)
AMCG00021141 tmm47,LOC105912477,LOC105030438,LOC106603112,LOC107662487,LOC103353305,LOC101483903 coding upstream 22630 6659537 ~ 6670212 (-)
AMCG00021145 pak3,LOC106563430 coding upstream 179028 6815935 ~ 6844522 (-)
AMCG00021154 LOC106563513 coding upstream 415629 7052536 ~ 7063256 (-)
AMCG00021152 tmem164,LOC102783906 coding upstream 442271 7079178 ~ 7079639 (-)
AMCG00021155 NA coding upstream 451094 7088001 ~ 7101704 (-)
G83860 pgrmc1 non-coding downstream 37906 6530936 ~ 6531273 (-)
G83839 NA non-coding downstream 304608 6264336 ~ 6264571 (-)
G83833 NA non-coding downstream 593398 5975474 ~ 5975781 (-)
G83773 NA non-coding downstream 1709950 4822058 ~ 4859229 (-)
G83764 NA non-coding downstream 1829295 4739096 ~ 4739884 (-)
G83901 NA non-coding upstream 6315 6643222 ~ 6643523 (-)
G83931 NA non-coding upstream 175325 6812232 ~ 6813434 (-)
G84052 gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379 non-coding upstream 753715 7390622 ~ 7390915 (-)
G84053 NA non-coding upstream 754157 7391064 ~ 7392433 (-)
G84081 NA non-coding upstream 825821 7462728 ~ 7469428 (-)
G83864 NA other downstream 22602 6544492 ~ 6546577 (-)
G83761 NA other downstream 1817944 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 3850260 2677585 ~ 2718919 (-)
G83428 NA other downstream 4109800 2457001 ~ 2459379 (-)
G83313 NA other downstream 4591211 1973160 ~ 1977968 (-)
AMCG00021153 NA other upstream 478513 7115420 ~ 7122491 (-)
AMCG00021249 NA other upstream 5456570 12093477 ~ 12100854 (-)
G84814 NA other upstream 5890186 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 6082957 12719864 ~ 12801586 (-)
G84952 NA other upstream 6990428 13627335 ~ 13627747 (-)

Expression


Co-expression Network