G84052 (gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379)


Basic Information

Item Value
gene id G84052
gene name gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7390622 ~ 7390915 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU104859
gttctTTCAATTGTATCAAAGCCAATTATGTGCTCTCAAAATATGGCCCAAGTTTCCAGGGAGGATGCACATCAATTCACATAGTATAACCAAtagattaaattgaaaaatccAAAGGTTATAGGAAATACAATCCTGGACCATTTGTCAATGGTGCTCACATCTGTAAGGTTTGGGATTTTAAGCTTCAGCTTCGATGACCGCCTTCGTAGACGGCAATTGGCACGATTACGCGCAGCACTGCGGTCGAGCGTGGCGTGGCCAAACCCATCCCGCGATGCCATCTGCTTTCTA

Function

symbol description
gabrb4 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brainstem; eye; optic tectum; and telencephalon. Orthologous to human GABRQ (gamma-aminobutyric acid type A receptor subunit theta).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104859 True 294 lncRNA 0.45 1 7390622 7390915

Neighbor

gene id symbol gene type direction distance location
AMCG00021157 NA coding downstream 65170 7223466 ~ 7325452 (-)
AMCG00021156 LOC102292396,LOC102784372 coding downstream 167773 7205421 ~ 7222849 (-)
AMCG00021155 NA coding downstream 288918 7088001 ~ 7101704 (-)
AMCG00021152 tmem164,LOC102783906 coding downstream 310983 7079178 ~ 7079639 (-)
AMCG00021154 LOC106563513 coding downstream 327366 7052536 ~ 7063256 (-)
AMCG00021161 NA coding upstream 49117 7440032 ~ 7441027 (-)
AMCG00021162 dkc1,LOC102780436 coding upstream 78842 7469757 ~ 7479786 (-)
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding upstream 91658 7482573 ~ 7491914 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding upstream 424213 7815128 ~ 7816111 (-)
AMCG00021173 NA coding upstream 515243 7906158 ~ 7914299 (-)
G83931 NA non-coding downstream 577188 6812232 ~ 6813434 (-)
G83901 NA non-coding downstream 747099 6643222 ~ 6643523 (-)
G83862 NA non-coding downstream 753715 6569179 ~ 6636907 (-)
G83878 NA non-coding downstream 810203 6578854 ~ 6580419 (-)
G83860 pgrmc1 non-coding downstream 859349 6530936 ~ 6531273 (-)
G84053 NA non-coding upstream 149 7391064 ~ 7392433 (-)
G84081 NA non-coding upstream 71813 7462728 ~ 7469428 (-)
G84089 LOC107575789 non-coding upstream 120646 7511561 ~ 7511989 (-)
G84093 NA non-coding upstream 162705 7553620 ~ 7644000 (-)
G84108 NA non-coding upstream 410214 7801129 ~ 7805537 (-)
AMCG00021153 NA other downstream 268131 7115420 ~ 7122491 (-)
G83864 NA other downstream 844045 6544492 ~ 6546577 (-)
G83761 NA other downstream 2639387 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 4671703 2677585 ~ 2718919 (-)
G83428 NA other downstream 4931243 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 4702562 12093477 ~ 12100854 (-)
G84814 NA other upstream 5136178 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 5328949 12719864 ~ 12801586 (-)
G84952 NA other upstream 6236420 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 6479024 13869939 ~ 13917868 (-)

Expression


Co-expression Network