AMCG00021162 (dkc1,LOC102780436)


Basic Information

Item Value
gene id AMCG00021162
gene name dkc1,LOC102780436
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7469757 ~ 7479786 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021162
AGAAGTAGCGCAGCGAAGATGGCGGACATGAACACTTCagctaagaaaaacaaaagaaagaaggagaagaggGTCTCTGATGAGGAAGTGGGGGAAATCCAACAGATGGGTGACTTCCTCATCAAGCCGGAGTCCAAAGTTGCATCCCTTGACACCTCACAGTGGCCTTTGTTGCTGAAgAATTTTGACAAGCTGAATATAAGGACAGCACACTACACACCTCTCCCAAATGGATCAAATCCTTTGAAGAGGAATATCCAGGACTATGTCAGGACTGGTTTTATTAACCTGGACAAACCGGCCAATCCATCCTCCCACGAAGTCGTAGCCTGGATTCGTCGGATCCTCAGAGTGGAGAAAACCGGGCACAGTGGCACGTTGGATCCTAAAGTCACCGGTTGTCTCATCGTGTGTGTGGAGAGAGCCACACGTCTGGTCAAATCCCAACAGAGTGCCGGCAAAGAGTATGTGGGAATTGTTCGGCTGCACAATGCTATTGAGAATGAGCATCAGCTTTCCAAGgCGCTGGAGACCCTAACAGGCGCGTTGTTTCAGCGGCCTCCTCTAATTGCAGCTGTGAAGAGGCAGCTGAGAGTCCGAACCATTTATGAAAGCAAGCTCATAGAATTCGATGCGGACAGGAGGCTTGGCATTTTCTGGGTCAGCTGTGAGGCAGGCACGTACATCAGGACACTGTGCGTTCACATCGGCCTTTTACTTGGGGTCGGGGGTCAGATGCAGGAGCTGCGGCGAGTGCGCTCCGGAGTCCTGGGAGAAAAGGATAACATGGTGACCATGCATGATGTGTTGGATGCCCAGTGGCAATACGATCATAACAAAGACGAGACCTACTTGAGGAGAGTCATCTATCCACTGGAGAAGCTGCTGGTTTCCCACAAACGTCTTGTAATGAAGGACAGTGCGGTTAATGCCATTTGCTATGGTGCGAAGATAATGTTGCCTGGTGTCCTCCGGTACGAAGATGGCATTGAAATGAACCAGGAGATTGTAGTCATCACCACTAAAGGAGAGGCCATTTGTATTGCGGTTGCCCTGATGACGACCGCAGTCATCTCTACTTGTGACCACGGGGTAGTGGCAAAGATCAAGCGAGTCATCATGGAGAGAGACACCTACCCCCGCAAGTGGGGTCTAGGACCAAAGGCGAGCCAGAAGAAAATGATGATTAAACAGGGATTACTAGACAAACATGGCAAACCCAATGGAAGTACGCCTGCAGACTGGAAGGAGGGATATGTTGATTACAGTATAACGAAGAAGGCCGATAAAGGTGACGCTGGAGTTGAATCAAATCAACCTACTGCCAAGaggaagagagaagcgAGTGGCAGTGAGAGCGATGGGACGGCTGCTGCTTCTGTACCTTCCACTCCCAAGGCAGAGGACAGtaagaaagagaagaagaaaaagaagaaagataaGAAACTAAAAGAGTCTGAAGAAGCAGTGGAAGAGGCTGCTCCAGAGGAGGGTGAGAGtgccaagaagaagaagaaaaagaagaaatcgAAGGAAGAGGAGGCTGCATCGGATTGAGACTGGAATAGTGCTTTGGAACGGTTTTGAACAATATCCCTCCATGAGGAAGAGAgcggagtcctggaagtgatgcaCTTCATGGATATTGAAGAATGTGGCACTGAAGCTGTTGACGGGTCGTcatccccaacccccccccacccactgccACCTGTTTTAAACCAGTTAGTCTGTGAGCAGCTGGCTATAGAGAATGTGATCAAGGCTTCTCTTCCTATATTTTACTCTCATTACCCTGTTTCTGTACGGACATGCAACAAGAGTGGAGCTCGGCTGGGTACGCTGTTAGCACATCAGTTCACCCGACTAGAACGGCAAATCTTATGTTTTTGGTTTCCTCCTTATAAACTGCCTCTGCCGTCCATGTGGCGTTGCCTCATGAATTATTCTGGAGTTGCTCGGGTGTGTAACCCTTATTATCATGTGTGAAGATGGACACtgttttatattgtactgtttattatttttgtactgtaaATATCTGAAATGACAGCATGGTGGAAATGTAATTGACCATCTGTGTAATGGGAGTTAACTTgatatttgatttataaattttttttttttcttaataattctGGTCTATTTTTCTCCTACAACTAGAGATTCTTAGGTTTGTTACCAAACTTTGTAGTGCAAGTGCCATCCCTGATAGAAGGAAAAGATTAAATTTGGCTTGACACAGGCTCAACCTGGTCAAAACCTCACTactctaaaaatgtaatttttttttggtaatcaCAACAAAAATTCTTGGATGTACCTTTCAAAGGGCCTCTGTCTCAAAATGGGGAAGTGAAATATAAGCATTAACATCTGTGTAAGCCAATCTGTTTCCTAGTATGTGCACTTAAGTTTAAATATAGTGGCATAAGTCTGATGAGGCCCTTTTGTTTATACTATCCTTTAAAGTTGTAGGTATAGTTCAGTGACAATTCACCAAAAAGGTAGGATTGTTGGAAAGCAGGAACGACAAGCTTATGTAAATGCCCTGCAAATGCTTTATTTGTGAATCATATGCATTATGGCATAAATACACCCACAGTTCTACCTATACCATCCTCATGACCCCTGAactataatgtaaaacaaaattgaatgtTATGCTTCAGGACCCACACCATTGATTCAGAACACTTAGGAGCATGTCAAGTTGAAAGTTTCATATTGCACCATTTCAATTGGCTGTACTGAGGGTAGTTtagtgtaaatatgtatgtggttttctctttcaaaagaGATTGAAGTTCCACATGCAGACTCACTTAGTGCAGCACACCCTGTGTGTTTTGTAGGCCTTTGTAAAGCATTGTAATCACTTAATAGTGATTAATAGTACTTGGTATAATTCTGATTTGGGCAACTAATCTCTTGGCAAATATCTGATAATGGACAGTGTTCTCATTGAGAGAGCTCTATTTGACATCTTATGAATTGTTACCTGATTATAATGGGTCACTTTTATGAAGACATACATCAGGTCAAAATGATTACACTGCTTAATAagcatgcatacaaacatacCAACAAAATCTGGTTTTAGATGTGAACATTAATGTCATAACTTTGATGATGTGGAATGTTAAAGGGCCAGTCCAATTCTAAACCTCATGAAATGATTCATGGAAAGGTGCAGTTTCccattttctttactttctgATATgtcaaacaatatataaatgtgcatCTCCCTGAGACTGGAGTATAAGTGACTTCCTTTCAAGGACCAATTCAGTCTATTACCACAGTTGCAATTTTTTAGTTCAAGTTGGCAATGATCAACCCTGACACTGCACTGGTTTTCAGCCTACTGTGGCTCTGTAATGTGATTGAAAAATGCAAGGTCAAATGAAAGGCAGATAAGAATTTGAAAGCTCAACAAAAACCTGCTGCCACTGGCCACCTAGACCCAGGATTATTCACTACTATTTTAAGCAGGACATTGTGCTGTCCATTCAATTAGTATAATTTTGACAGGTCCAGGATGCAGTTAGTTAGATACTGGCAATTAAAGTGATGGAAGACTGATTAAATGCTCAATCTAAACATACTTTAAAGCTTTTTCTTAAAGATTTCATTCTTGCCCAACCATCTATAAACACTATTTAGTGTTACATACCACATAATTATTGCCACTAGTGATTAGTGATAAAATATGTGCAAGAAATGAccaaatgtctttaaaaaaccTGTTAACCCAGCATTGACCTGTGCTTGCCTCCATTTTGtgagaaaaaacatgtattggcATGATGTGATGTTTTGACAAAAGATGTGAAGCAACTCCAGAAATACCTCTgcctttgtattgcttttttaggAACAGTGAATGTGCCCCAAGTGTTGATATAATcgttacagattttaaaaacaacaggttaaaaaggaaaggaagtGATACATGGAAGGCTTTCTCTATCTAATGGGAAACTGCACCTCCACAGGTCTAGGAGTTAATTCAACTGGGGGATTTTGGGAACAGGTATGTGTGATCAGTACACCCAGGACACGGGCACCCACTGGGGTGTGGAGCCGACGTGCTCTATGGCCTCTTCCACTCCCTTCACGCTCTCCTCCACATCGTTGTTCACCAGCGTCAAGTCAAAATAGTGTCCGTACGTGCTGAAAATTTCGTCCGACTCCTTCTGGATCTGCTGCAAGGATTCGGTCTGGTTGGCAGTGGTAGTTGGGGCAATGAACACAACAATAGGTGCAAACTCTGCTGTCCGAAGGAGTTTCAAAgtctgaacaaaacaacaaaaacggttatgttaaaaaaaatgttaaaacttcACCCAGTATTGAGAAAGATAT

Function

symbol description
dkc1 Predicted to enable pseudouridine synthase activity. Acts upstream of or within definitive hemopoiesis and rRNA processing. Predicted to be part of box H/ACA snoRNP complex. Is expressed in central nervous system; optic tectum; and proliferative region. Used to study dyskeratosis congenita. Human ortholog(s) of this gene implicated in X-linked dyskeratosis congenita; aplastic anemia; and dyskeratosis congenita. Orthologous to human DKC1 (dyskerin pseudouridine synthase 1).

NR:

description
PREDICTED: H/ACA ribonucleoprotein complex subunit 4

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K11131 DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021162 True 4374 mRNA 0.43 16 7469757 7479786

Neighbor

gene id symbol gene type direction distance location
AMCG00021161 NA coding downstream 28730 7440032 ~ 7441027 (-)
AMCG00021157 NA coding downstream 144305 7223466 ~ 7325452 (-)
AMCG00021156 LOC102292396,LOC102784372 coding downstream 246908 7205421 ~ 7222849 (-)
AMCG00021155 NA coding downstream 368053 7088001 ~ 7101704 (-)
AMCG00021152 tmem164,LOC102783906 coding downstream 390118 7079178 ~ 7079639 (-)
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding upstream 2787 7482573 ~ 7491914 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding upstream 335342 7815128 ~ 7816111 (-)
AMCG00021173 NA coding upstream 426372 7906158 ~ 7914299 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding upstream 473286 7953072 ~ 7976121 (-)
AMCG00021176 shroom4,LOC107588210 coding upstream 502614 7982400 ~ 8024402 (-)
G84081 NA non-coding downstream 329 7462728 ~ 7469428 (-)
G84053 NA non-coding downstream 77324 7391064 ~ 7392433 (-)
G84052 gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379 non-coding downstream 78842 7390622 ~ 7390915 (-)
G83931 NA non-coding downstream 656323 6812232 ~ 6813434 (-)
G83901 NA non-coding downstream 826234 6643222 ~ 6643523 (-)
G84089 LOC107575789 non-coding upstream 31775 7511561 ~ 7511989 (-)
G84093 NA non-coding upstream 73834 7553620 ~ 7644000 (-)
G84108 NA non-coding upstream 321343 7801129 ~ 7805537 (-)
G84132 NA non-coding upstream 444235 7924021 ~ 7931516 (-)
G84156 NA non-coding upstream 498464 7978250 ~ 7979823 (-)
AMCG00021153 NA other downstream 347266 7115420 ~ 7122491 (-)
G83864 NA other downstream 923180 6544492 ~ 6546577 (-)
G83761 NA other downstream 2718522 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 4750838 2677585 ~ 2718919 (-)
G83428 NA other downstream 5010378 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 4613691 12093477 ~ 12100854 (-)
G84814 NA other upstream 5047307 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 5240078 12719864 ~ 12801586 (-)
G84952 NA other upstream 6147549 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 6390153 13869939 ~ 13917868 (-)

Expression


Co-expression Network