AMCG00021156 (LOC102292396,LOC102784372)


Basic Information

Item Value
gene id AMCG00021156
gene name LOC102292396,LOC102784372
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7205421 ~ 7222849 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021156
ATGAAACTGACAGATTACCAGCAGCAGTATTACAGTAAAAGGAAGGATCCTGAAGGGGCACGACAAGCGACCGTGTTCAAGTTAACAATACACGCCGAATGCCCCATGCACTTGGAAGACTTCCCAATGGATACCCATGCATGTCCATTAAAGTTTGGAAGTTATGCATACACAAACTCAGAGGTGGTATATCTTTGGACAAACGGGGATGAGAACTCAGTGGCTGTGGCCGAAGATGGCTCCCGATTAAACCAGTACGACCTGTTAGGCCATGTAATCGGGACTGAAGTGATCAGTTCTAGAGAATATATAGTGATgacaacacatttccatttgaaaaggaaaattggCTATTTTGTGATTCAAACTTACCTTCCATGCATCATGACTGTCATCCTGTCTCAGGTTTCCTTCTGGCTAAACAGGGAATCAGTTCCTGCTCGCACTGTTTTCGGTGTCACCACTGTTCTAACTATGACCACCCTAAGCATCAGTGCCCGAAATTCTCTACCAAAGGTGGCTTATGCCACAGCCATGGACTGGTTCATGGCAGTCTGTTACGCCTTTGTGTTTTCGGCACTGATTGAATTTGCAACAGTTAACTACTTCACCAAGCGGAGTTGGGCATGGGACGGGAAAAAAGCTTTAGAGGCACAAGAGTTACGGaGGAGGGAATCGGCACCTCTTTCAAAGAAAGCCAACAACACATTCAACATTGTGGGAACAACCTACGCCATCAACATAGCTAAAGATCCAGGTTTAGCAACCATTTCCAAGAGTGCTACAGCTCCGGTCAAAATGCCCAAGATAGAAGAAAAGATAATTGAAAGCAAGAAAACCTACAACAGTGTCAGTAAAGTGGATAAAATGTCCCGTATTATATTCCCTGTGCTCtttgccatttttaatttagtttattggGCAACCTACGTCAACAGGGAATCTTTAATCAAGCGTTCAAACCCTAAAAAGTGA

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit alpha-3-like isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021156 True 975 mRNA 0.44 6 7205421 7222849

Neighbor

gene id symbol gene type direction distance location
AMCG00021155 NA coding downstream 103717 7088001 ~ 7101704 (-)
AMCG00021152 tmem164,LOC102783906 coding downstream 125782 7079178 ~ 7079639 (-)
AMCG00021154 LOC106563513 coding downstream 142165 7052536 ~ 7063256 (-)
AMCG00021145 pak3,LOC106563430 coding downstream 360899 6815935 ~ 6844522 (-)
AMCG00021141 tmm47,LOC105912477,LOC105030438,LOC106603112,LOC107662487,LOC103353305,LOC101483903 coding downstream 535209 6659537 ~ 6670212 (-)
AMCG00021157 NA coding upstream 617 7223466 ~ 7325452 (-)
AMCG00021161 NA coding upstream 217183 7440032 ~ 7441027 (-)
AMCG00021162 dkc1,LOC102780436 coding upstream 246908 7469757 ~ 7479786 (-)
AMCG00021166 tmlhe,LOC106563395,LOC107715863,LOC107562156 coding upstream 259724 7482573 ~ 7491914 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding upstream 592279 7815128 ~ 7816111 (-)
G83931 NA non-coding downstream 391987 6812232 ~ 6813434 (-)
G83901 NA non-coding downstream 561898 6643222 ~ 6643523 (-)
G83862 NA non-coding downstream 568514 6569179 ~ 6636907 (-)
G83878 NA non-coding downstream 625002 6578854 ~ 6580419 (-)
G83860 pgrmc1 non-coding downstream 674148 6530936 ~ 6531273 (-)
G84052 gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379 non-coding upstream 167773 7390622 ~ 7390915 (-)
G84053 NA non-coding upstream 168215 7391064 ~ 7392433 (-)
G84081 NA non-coding upstream 239879 7462728 ~ 7469428 (-)
G84089 LOC107575789 non-coding upstream 288712 7511561 ~ 7511989 (-)
G84093 NA non-coding upstream 330771 7553620 ~ 7644000 (-)
AMCG00021153 NA other downstream 82930 7115420 ~ 7122491 (-)
G83864 NA other downstream 658844 6544492 ~ 6546577 (-)
G83761 NA other downstream 2454186 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 4486502 2677585 ~ 2718919 (-)
G83428 NA other downstream 4746042 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 4870628 12093477 ~ 12100854 (-)
G84814 NA other upstream 5304244 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 5497015 12719864 ~ 12801586 (-)
G84952 NA other upstream 6404486 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 6647090 13869939 ~ 13917868 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_02006204_02114841 GABRA3 coding CI01000040 null 2006204 ~ 2114841 (-)