AMCG00021141 (tmm47,LOC105912477,LOC105030438,LOC106603112,LOC107662487,LOC103353305,LOC101483903)


Basic Information

Item Value
gene id AMCG00021141
gene name tmm47,LOC105912477,LOC105030438,LOC106603112,LOC107662487,LOC103353305,LOC101483903
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6659537 ~ 6670212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021141
CTGAGTCCGCAACTCTTCACACGGCGCCGGGGCTGCGGACGAGCGGACGAGCGGACGAGCGCACAACTTTCCCCGAGCAGCAGCTGCCTTTTCCCGTGCGCTGTGCCAGCCGTCCTGCTCTGCTCCTGCTGCCGACTGTGAGAAGATGTCCGTGAACGAGGTGTACGTGTTCCGGCCCTTCAAGCTGGTCGCCCTGCTGTGCGTGTTGCTGGCGCTGTGCCTGGACGTGGTGGCCCTGCTGAGCCCGGCCTGGGTCACCGCCGAGCGCTACTCGCTGTCCCTGTGGGAGTCGTGCCGGCGCGACGCGGCGCTGTGGCGGTGCATCTCCACCCTCAGGACGGACTGGCAGGTTGCCACGTTGGTTTTGCTGTTGGCGGGGGCAGCGGTCACTCTGGTAGCCTTCCTGATTGCTGTCATTTCCCTGTGCCACGGGACCCAGAGGAAGCACTACCGCACAGTCGCCATCTTCCTCTTCACTGCAGTGGTCCTGCAAGCCTGCGCTCTGGTCCTGTATCCCATCAAGTTCATCGACGGCACAGTCCTGCAGACCTACCACGAGTTCAACTGGGGCTACGGCCTGGGCTGGGGTTCGACCATCTTCATGCTGGGGGGGGGCATCCTGTTCTGTCTGCGGACTGACATGTATGAAGACGCGCTTTACTAGGTCAGCCTCGACTATTATTAGATAGTTAACAGGACTATTATTAAACTGGTCTGCCGAGGCACTTGTGGGAGAGATGAAATATTAGCAGCAGCTGGATGGAGAAGATGGTAttgtcagcttttttttttcttcctcaagcCAAGGATAGAAATGGAGGGCAACTGAGAGGAATAAAACCACGaggacagacagcagcctcttCTAAGGGAACCTCCAACCTGATTTCCATCTTTACAGTTCCCTAGTGATTCTCCACAACAACAACGAAATAAGATAGTTTTGTTGTAAGTTTGGGATTTCTTTAAAAACGTTTTTCTTATTGTTCTTTCCTTTCTGAAACATACTGaactacaaaatgtgtattggAATATCACTTCCCTCAAATCCTCTTATCTAAGATAAAAGAGtggcatttatatttgtattttattttattttctgaactcTACTTTGTGTATACCTTATATGctgaaaaaaagtgtttcattgCCTGATATTGGAAGTGGAAAAGTTGTCTGACTGATGGATCTTAAGTGTGGGGTTGTTAAGGTTTACGTTTTAAAATGGAGTGATAATATGCATATAGGCATTGGTTTTCATTCATAATTAGTTATTCCCTTTTATTAGTAAATGGTCAGTAAATATCACCTTGTTAATAGATGTTCACAGGACCCAAAAGATTATCACTATTACTTGATTTAATCTCCCGTTCATCTATGCATTTCTGTCATTCACCCTAAAGGCTTCAACAGTATCATTTTGAAATCCTTGTTTGATAGTACGGTATTGCATGCATCATTTATTGTCATTCACTGATGTATTCTTTATCTGACACACTTCATCTGTAATTTATtcttaaaacagtatttaactctgacaatattttgtataactGCTACAATATCAAAGCAAGTAACAGTTAAAATATTCCCACTACTAGATTCAGTCTCTTTACTTAACGCTAACATGTAACACTCCCATTGTTGTTAATCTAGAACCTTTACAAAATAGATTTGTATCCTGCcaattgcatttaattcaaatgtagtcatacacaaaataatcatTATGACTGCATTATGTTCGTATTTGATTGATAACCATTTCAGACGTCACTGATGATGATATTCCAAATGTCATTGTAAATAAAGTTGCTGTGCAAGTTTTGGATGTTATCTCCTTACTCCGATACCTATTGTGAAATGTTGTACTGTTTGGTACTGGACAGATTtgatctattttctttttattgtaaatgtcatAAATGAGGTTTATTTTCATGTCAATAGCGCTGCtcggaaataaataaatggcaactTAAACTCTCCTTCTTTCACAGCAAATTCAAAAGTGTTAAATTCCTAGTGTTAGTGGTTTCAGAGTTGAAGTGTTAACATATTGGTGTTGTTTTTGAGGATATAGATACCACCTAGTGTCCATTTAACTGAATTGGAAATGTTAAATTCAAGTGTTTGTCCAACCAGATCCAACCAACACGCAACGGTGcaaaaatgatgatgaaaatgttgttttcactcGTTTTAATATTCGGTTTTCCAGATTATGTTAAAGAATGCTGCCCATATACTGTAAGATTATGCATGAAAAATTGAATTATGTATGTTATACAGTTGCTGCAGAATCCACGTGTTATACTGGTAATGAATGcgaaagaaaacaataacaatttcGATTTATATGCAAAATGTGACTTTGAGTTTTAAAACTCGAGTTTAAAAGTCAAAATTAGGaggtttatttattctttcatatGGCCACAGGGCTCTTCTCCAGGGAAATATGTAGgtatttaaaaagcttttactCTATGTTGTATATAAGTATTTTCTACTGAGCATGTTTGGGGGCagtttacagttacagttacagttttaGCTATGATGATATAACCTGGAAAATGGCGACCCGTTTCTTGACTGATGCAATTTTATTTCCTCTGCCTATTTTTCAATGGAAGAAGGTTGACAAATAATCAAGACTTCTAagattttgtaattaaaatgagagTATTTTTGTGATAACTATTGTAAGCTGTGACTTTAAACGGTAGTTAATGCCTGGAAATATTGTTAAACGCTTTTGATTCGATAGTTGAGATTATATTGAGACGTTTTTTTGTCCACCTAACATGAGGTAAACCCGGAATCCTTAGAGATCGCCATGTAGTTATAATTAAACCTTGAAATTTACTTAAGATACAAATTGGCTACAGGGCTATCCTAATGTACTCTGTTTGTTGTCTAGATTACTGGTAGTTGACTGTCTGTTGTATCCCTTTATGAGTCCACAGATTTGACAATGATTGTGAAAGTGCAATACAGGAATagcaagaaatatattaaactgtCTGAGTCGTCCTACTGTGAGTTCATCTTTGAAGGAATGACACAATATGGATAATATCAACATAAGAATACATAGTGCCTAACCAATATTTCTACTCCTAAGTATGTATTCAtgcaaatatacagtactgtgcaatagttataggcag

Function

NR:

description
PREDICTED: transmembrane protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021141 True 3179 mRNA 0.40 3 6659537 6670212

Neighbor

gene id symbol gene type direction distance location
AMCG00021135 NA coding downstream 117235 6538542 ~ 6542302 (-)
AMCG00021136 NA coding downstream 209365 6449423 ~ 6450172 (-)
AMCG00021134 LOC100697681,LOC101472898,LOC102787112,LOC102308013,LOC102213142 coding downstream 237799 6397628 ~ 6421738 (-)
AMCG00021125 fam199x,LOC100194523 coding downstream 1922323 4728373 ~ 4737214 (-)
AMCG00021122 LOC106604955,LOC106611984 coding downstream 2193879 4463840 ~ 4465658 (-)
AMCG00021145 pak3,LOC106563430 coding upstream 145723 6815935 ~ 6844522 (-)
AMCG00021154 LOC106563513 coding upstream 382324 7052536 ~ 7063256 (-)
AMCG00021152 tmem164,LOC102783906 coding upstream 408966 7079178 ~ 7079639 (-)
AMCG00021155 NA coding upstream 417789 7088001 ~ 7101704 (-)
AMCG00021156 LOC102292396,LOC102784372 coding upstream 535209 7205421 ~ 7222849 (-)
G83901 NA non-coding downstream 16014 6643222 ~ 6643523 (-)
G83862 NA non-coding downstream 22630 6569179 ~ 6636907 (-)
G83878 NA non-coding downstream 79118 6578854 ~ 6580419 (-)
G83860 pgrmc1 non-coding downstream 128264 6530936 ~ 6531273 (-)
G83839 NA non-coding downstream 394966 6264336 ~ 6264571 (-)
G83931 NA non-coding upstream 142020 6812232 ~ 6813434 (-)
G84052 gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379 non-coding upstream 720410 7390622 ~ 7390915 (-)
G84053 NA non-coding upstream 720852 7391064 ~ 7392433 (-)
G84081 NA non-coding upstream 792516 7462728 ~ 7469428 (-)
G84089 LOC107575789 non-coding upstream 841349 7511561 ~ 7511989 (-)
G83864 NA other downstream 112960 6544492 ~ 6546577 (-)
G83761 NA other downstream 1908302 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 3940618 2677585 ~ 2718919 (-)
G83428 NA other downstream 4200158 2457001 ~ 2459379 (-)
G83313 NA other downstream 4681569 1973160 ~ 1977968 (-)
AMCG00021153 NA other upstream 445208 7115420 ~ 7122491 (-)
AMCG00021249 NA other upstream 5423265 12093477 ~ 12100854 (-)
G84814 NA other upstream 5856881 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 6049652 12719864 ~ 12801586 (-)
G84952 NA other upstream 6957123 13627335 ~ 13627747 (-)

Expression


Co-expression Network