AMCG00021166 (tmlhe,LOC106563395,LOC107715863,LOC107562156)


Basic Information

Item Value
gene id AMCG00021166
gene name tmlhe,LOC106563395,LOC107715863,LOC107562156
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7482573 ~ 7491914 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021166
CGCCTGCGTGTCAGCGTTGTGCTAGCAGAGCAGGCATCGGGAATGGCGCGGAAGTGCTCGTTTAATAATTAAGCCTATAGATATACCATGGTATTAAATGAATGCCTTGTGCTGAAGTCCAGGGAATCTCAATCAAATTCCACCTAAGTGTGCGGAGAGGGCAGCTAAGAGGAAAGTTAAAGCTTTCAGAATCATGGCTCTAACGCGTGCAATTGCTCGTCTGGGTAGTGGCTTGCAAACCTTGCCTAGAAGTGGTGCCCAGACTTTGGCCAAGTGGGATTTTGGACATATGAGATCCCTGCCTGCTGTCAAGCGTTGGCAGCACACAGCACCACAGTCTGCCAGCTGTGTTTGGCACCTCCGAGATGATTGCCTTGAGCTCAGCTACAGGGGGTTGGTGATGCACTTTGACTATGTGTGGCTTCGGGATCACTGTCGCTCTGCCTCCTGCTACAACACGAAAACCAACCAGCGAAACCTAGACACTGCCAACGTGGACCTGAGCATACGGCCTTTAAAAACAAGAGTGGATGAGGAAACCATGTTCCTCACTTGGCCTGATGGTCATGTGACACGATACAACCTGGCCTGGTTGGCTGAACACAGCTATGAAGGACAGATGCGAAACGCCGTCCAGCCCAGGATTCTGTGGAACTCGGAGATTTACACCGACGCCAAGGTGCCCTCGGTTAGCTGCGAGAACTTCATGAGCTCCAGCGAGGGGCTGAAGACATTCATGGAGCACTTCCTGCTGTACGGCATCGCTTTTGTAGAGGACGTGCCCCCGACTCTCGAAGCCACTGAGACGGTTGCTCAGCGCATCAGTCTGATCAGGGAGACGTTGTACGGCAGAGTGTGGAATTTCACCTCGGATTTTTCCAGAGGAGACACGGCGTACACTAAACTTGCCCTGGATCGTCACACAGACACTTCCTATTTTCAGGAACCTTGTGGGATTCAGGTGTTCCACTGTCTGAGACACGAAGGGACCGGGGGAAGGACACTGCTTGTGGATGGCTTTCATGCCGCAGACAAGGTTCTCCAGGAGACCCCCGACAACTTTGAGCTGCTCACCAGGGTCCCCATCAAGCATGAGTACATCGAGAACGTGGGTGGCTATCACAACCACATGATTGGAATTGGGCCAGTGCTCAATGTCTATCCTTGGAACAACGAGGTCTACATGATCAGaTACAATAACTATGACCGCACGGTGATCAACACTGTTCCTCATGACGTTGTGCAGCGCTGGTATGTAGCTCATCGAGCTCTCACCACAGAGCTGAGGAAGCCAGAAAATGAGCTGTGGGTCAAGCTGAAGCCAGGAAAGGTTCTTTTCATTGACAACTGGCGGGTCCTCCATGGCAGAGAGTCCTTCACAGGCCTGCGCCAGCTGTGTGGTTGCTATCTGACCCGGGACGACGTTCTCAACACTGCAAGATCTCTGGGGCTCAAAGCCTAAATGCGTACCCAGAACTTCAAACCGCAGCTTTAATCAACCAAAGCGCTCCCTAGTCACAGCTAGTCTAGTCTTCTCAGCACTCTTTCATGAATTCAGTTGAATTTAGTATAAAAAAATCAGTCCAGCTAGAAGGTACTATCTGAAGTACACTAGTATTGTCTCTTAAAGTTGGTGATACAGTAAGGGTAAAAGAACAGAGGCAAGGTTTCTAATCTGGCATCTCCCACATTATTCTTcagtataatgtttttattctatttatttattttgttttacagagacACCAAAACATATCTATGATTCTtataagaaaatgttatttttctcattcaGTTTAAGGCATATTACAATTGTTGTGACTGAAAGCAAGTGAGATGTGTGTGATAGATCAGTCTCTTTTACCTCAGTGTGCCTTAGTGGCTTAAGTCATGTAAAAAGACAAACTAAATTGGTTCCTGTTGTATAAGACATACCTTACCTTTGATTCCGTGATACTGTACTGTCAAGGCAAGCAGTATTCATGTCTTGATTTAATGAAGAATTACAAGGTGTGTCTGTATAGTAATTGTTCAATTCAGACGATTTTGAAGTACAAAGTTAAACAACACTAAAGTAATTAATAAGGCTGTTTTCACAGAGTATGCATTGATGTCCTTTGTATGTCATTATGTCTTTACATTACCATACAGTGAGCAAACGAATACCTTAAAATCAATAAGAAATGGAATATCTGTCCCTCAAAAATGTATAACCCTACACTGTCTTCTGTTAactatgtttttcaaatgaaccgaatacattttattttactgtatgcattaaaaaaataaactgcaatctGAATGGCTTTATAagcactgtttttaattaatataggtctgtttataatttgtaagtattaaaatttccaacatgaaaataaaatcctatataaatgtaaaca

Function

symbol description
tmlhe Predicted to enable iron ion binding activity and trimethyllysine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human TMLHE (trimethyllysine hydroxylase, epsilon).

NR:

description
PREDICTED: trimethyllysine dioxygenase, mitochondrial-like isoform X2

GO: NA

KEGG:

id description
K00474 TMLHE; trimethyllysine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021166 True 2405 mRNA 0.44 8 7482573 7491914

Neighbor

gene id symbol gene type direction distance location
AMCG00021162 dkc1,LOC102780436 coding downstream 2787 7469757 ~ 7479786 (-)
AMCG00021161 NA coding downstream 41546 7440032 ~ 7441027 (-)
AMCG00021157 NA coding downstream 157121 7223466 ~ 7325452 (-)
AMCG00021156 LOC102292396,LOC102784372 coding downstream 259724 7205421 ~ 7222849 (-)
AMCG00021155 NA coding downstream 380869 7088001 ~ 7101704 (-)
AMCG00021169 LOC107669001,LOC107691958,LOC107562838,LOC107742332,LOC107588216 coding upstream 323214 7815128 ~ 7816111 (-)
AMCG00021173 NA coding upstream 414244 7906158 ~ 7914299 (-)
AMCG00021175 clcn5a,LOC107715429,LOC106563682,LOC107557080,LOC107733513,LOC107673797 coding upstream 461158 7953072 ~ 7976121 (-)
AMCG00021176 shroom4,LOC107588210 coding upstream 490486 7982400 ~ 8024402 (-)
AMCG00021188 LOC107707922,LOC101154659,LOC108412583,LOC101071205 coding upstream 773035 8264949 ~ 8275630 (-)
G84081 NA non-coding downstream 13145 7462728 ~ 7469428 (-)
G84053 NA non-coding downstream 90140 7391064 ~ 7392433 (-)
G84052 gabrb4,LOC108429394,LOC103032374,LOC107727281,LOC107571379 non-coding downstream 91658 7390622 ~ 7390915 (-)
G83931 NA non-coding downstream 669139 6812232 ~ 6813434 (-)
G83901 NA non-coding downstream 839050 6643222 ~ 6643523 (-)
G84089 LOC107575789 non-coding upstream 19647 7511561 ~ 7511989 (-)
G84093 NA non-coding upstream 61706 7553620 ~ 7644000 (-)
G84108 NA non-coding upstream 309215 7801129 ~ 7805537 (-)
G84132 NA non-coding upstream 432107 7924021 ~ 7931516 (-)
G84156 NA non-coding upstream 486336 7978250 ~ 7979823 (-)
AMCG00021153 NA other downstream 360082 7115420 ~ 7122491 (-)
G83864 NA other downstream 935996 6544492 ~ 6546577 (-)
G83761 NA other downstream 2731338 4703255 ~ 4751235 (-)
AMCG00021090 NA other downstream 4763654 2677585 ~ 2718919 (-)
G83428 NA other downstream 5023194 2457001 ~ 2459379 (-)
AMCG00021249 NA other upstream 4601563 12093477 ~ 12100854 (-)
G84814 NA other upstream 5035179 12527093 ~ 12527694 (-)
AMCG00021259 diaph2 other upstream 5227950 12719864 ~ 12801586 (-)
G84952 NA other upstream 6135421 13627335 ~ 13627747 (-)
G85037 LOC100846954 other upstream 6378025 13869939 ~ 13917868 (-)

Expression


Co-expression Network