G85784


Basic Information

Item Value
gene id G85784
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16647139 ~ 16649848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107071
gaaaggcatcgaccacatcaaaccagaggagcttttccagttcagcggggacacatgcacccggggacacaaatggaagttgggcttcaaggcattcaaaacggaaaacaggagacacttcttcacacagagaggcgtcacaatctggaacaaactctccagcgatgtggtagaagctgaaagtttgggaacatttataaatagactggataggatccttggatcacttagatattaatggacaccaaacgagcacgatgggtcgaatggcctcttctcgtttgtaaactttcttatgttcttatatatatacacagttatttatatttatttatttgtatacacaCACCCCTCAGGGACCATCACCCTGTAATTGAAGCAAgtcaaatcaaacaaagcaaatattCCTTAGCCtatacagttaatttaatttgagccAGAGCATGGAGCAGAGCTGCAGCAGCTACAAACTGGCCAAACCGGAGCAAAACTTCAAAATATTTGCGGCACCGAATCCCTGGTTACAATAATGGACACCAGCTGTAGTGCTTTCTTTCTGATAGAAGAACACTACAGGTCAGACTACACATGCAGCAAGGCACAACAGCACGATGGAGTTCACGCTCGCATCCTTGCCTTTCCCAAACAGCCCCTGTGCTCTGCAAGTCCTGGTGGCTCCCAGAACCTTATTTGACATGATGCATTGCGATCGGCCTGGGAATAGGGCCACAGAGTTTGGCTCTTTCCTTCCAtgatagagagaaagaaacaaggTGCCACAGACGGGCAAGCCAGGCAAAGTGGTGCTGCAGAGCGTACCCCGCCCTGGCCCTGACAGAGATGCAGTACTTACTTGTGGCCCCCAGCCTCCTGGTGTCCCTAGCGATGTAATTGGCAAAGATGATCGACCGCATGCTGGTCTTCCCAGACCCACTCTTCCCCATAAGCAGCACctttttctTCATGGCTGTGCTCGACATCGCCCCCTCTTGGACGGACTGCTCCTGAACCTGCTGAGTCTCtgtccccccttctctctcactGCACCCCGTTTCTCTGTGCACGATTTTCTGCCGGCTTGGTCTCTCagacatgaaacaaacaaaaactgcNNNNNNNNNNNNNNNNcccccccccaaaaaaaaaaagtcagaatgGATTTAGTGAAACTCATGGGTAGAGAGAGTTCCTAACACACAGTTTTAGTCAATATTACAGAAATGCAGTGGAATGCAATGTCTAAACAAGTTGCCTGATGCAAACAACCTCACTGAATGGGTTAGACAACGTGACCCATGCATAACACAGAAGTAAACATTACGAAGACCATGCATTTCACAATACTCTCGCACTATCATGTGACAGTGATGGATCCTGCCAATCTGACTTATTAAAGCACAGGTAGCAAGTGCTGAACTACATGAGCAGAGTCCTGGCGTTACAGCTCCAGCACACAAAACGAACCACCACGACACACAGCTGATCATGTGCCTCTTCATCATTACGTGTCAGAAAACGGGCCTATTTAAAACAAGAGGGTCCGTTTACTAATAAAGTCCGTAGATCTACCGAGAAGCACAATAATCCCACTTGATATACCAGTATACACAAAGACTACAGTGAATCCAAGCATCAATGGGTGAATGCGATTTAAGTGCAGGTAACAGCTTCGGGTGCGATTTATACCGTCTGCTTGACTGTAAAAGGCCTTCAACTGGTATCTACGGAACGGTGTTGGACGAGTGCTGTGGAGAAGGGGAAGTGAGCTCAACTTCAAAACAGCGCAGAAAAACAAGCGCTTTTAATAGACGCTGACGTCTTCATACTTGCAGCTGCACAACGCGAACAAAGCAGGTGAAACAGACACATAAACATGGGCTTTAACAGCATATTGGTTGTGAGGctgtgaataaatacaaaatatagtcATCAGtgtttggtaaaaaaaaaacagcatcgTCTCACACAGctgatacaaacaaacaattctCCCCTACAGCGTTCCAAATGGAGCGCTGtgttcatacatacatacatacatacatacatacatacataaatggaCGCGGCTTGCCAACAGAACCGACCGGATAAAGAAACGCTACCGCGGTCCCCCACCTCTTTTGCTTATGTCTCCGTCGGTCCCATGTCTCGTCTCCCGACTGTCCTCCGCTGCGTCAGGCCCGAACCAGGAATCTGCCGTGCGCCACTCACGTGATTAATGCGGGAC

Function

NR:

description
PREDICTED: snRNA-activating protein complex subunit 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107071 True 2230 lncRNA 0.46 2 16647139 16649848

Neighbor

gene id symbol gene type direction distance location
AMCG00021407 LOC105927798,LOC100704732,LOC103366304,LOC102229095,LOC107386560,LOC101162152,LOC101061287 coding upstream 4652 16636355 ~ 16642487 (+)
AMCG00021403 NA coding upstream 67595 16573928 ~ 16579544 (+)
AMCG00021401 NA coding upstream 85363 16556598 ~ 16561776 (+)
AMCG00021399 nup62,LOC100135786,LOC106603332 coding upstream 91494 16550033 ~ 16555645 (+)
AMCG00021400 cnga2,LOC103395327 coding upstream 101640 16541957 ~ 16545499 (+)
AMCG00021408 NA coding downstream 3592 16653440 ~ 16655886 (+)
AMCG00021415 NA coding downstream 105085 16754933 ~ 16756372 (+)
AMCG00021416 NA coding downstream 128734 16778582 ~ 16790852 (+)
AMCG00021417 NA coding downstream 147810 16797658 ~ 16806805 (+)
AMCG00021419 NA coding downstream 182434 16832282 ~ 16833265 (+)
G85766 NA non-coding upstream 50237 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 57728 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 62374 16584317 ~ 16584765 (+)
G85758 NA non-coding upstream 74271 16572193 ~ 16572868 (+)
G85757 NA non-coding upstream 77489 16569447 ~ 16569650 (+)
G85823 NA non-coding downstream 157958 16807806 ~ 16809314 (+)
G85876 NA non-coding downstream 386724 17036572 ~ 17042575 (+)
G85903 NA non-coding downstream 436904 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 648311 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 809645 17459493 ~ 17459941 (+)
G85764 LOC103366846,LOC106930986 other upstream 54166 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 573518 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1214775 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 2574014 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 2613582 14016133 ~ 14033557 (+)
G85787 NA other downstream 6796 16656644 ~ 16714038 (+)
G85869 NA other downstream 348029 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 820477 17470325 ~ 17473396 (+)
G86121 NA other downstream 1598642 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2397201 19047049 ~ 19055103 (+)

Expression


Co-expression Network