G85876


Basic Information

Item Value
gene id G85876
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17036572 ~ 17042575 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107184
TCCaaggattattttattaagagaCATCCAGAACTTACTGCTTAAAATAGTGGGGTAGCACAGACACCTGCATATTTCAATAGATGttcaattttcatttaaaaaaactcttatcccatgattaaaaaaaaaaaaaaaaatctgcatatGTTGTCGCCTTCTAcaagttaatattattattttatgtatttatttattaactttgttttatcaaaataattttcaacatggttttaaaaaaagtcaGCCCACATCATAAATCTGTCTGGAATGTTTTCAGTTGTAATTATTCCTCTGTCTTACAAACAtccatttaaaaagaagaaaataaaattaaaataaaacaaacaaagacaaagatcAACTCACTGCACATACAGAGGATCTGGGGGCCCAGCCTAGCCGGGCGTCTGAGCAGGGGAAATGGAGTAAAACTCTCACAGTTCAATTCTACCACCTGAAACTCCCTCCCTACACCAGCACAAGCTACGGACAGTCacaaaatgtcataaaaaaaatcttttgctttcttcccattttttttttcatttttcagttgtGTTCGTCTCATTTTTTGTTAAGTTTTTTGCAGACGCTTGATAGGACGCTGCAGAACTGCAAGGTCTTCCACTTAATTAGCTTTTTTGTGCTAAAAACCTGTACCGATATTTATAAAATCATTGATAAAAATATTCCTCTGATAACAATATGTCAAGGAGGGGGGACACCACACAACAGAGATTGGGGAATCTGGGGGGAGAAGAGAAGGGGAGGAGAGTGGGGTAGGGGAGAAGGGGTGTGGAGGAGATAGGCGGAGGGGAGGCGGTGGGGGGGTAGGGCAGTGTCGCTACTCAGACTTGGCTTCTTTATCCTCAGAGTCCTCGGGAGTCTCCATTTTCAGAGTGGTTCTCCTCATTGGCTTCTCCCTCTGCCTTGCCTCCCTTCTTTCCCTTGGTCTTCTTGTCCTCCTTCTTGTCATTCACTGCTTTCTCTTtCTTTGCTGGCTTTTTCGGTTTTGGTTCAGGTTTGGGAGGTGCTGGTTTTGCTGATAGCCTCGCAGATCTCCTCTGAGGCTCCTCCTTCGCCTCTCCTTCAGTTCCCTGTTGCTGCTTTCTCTTCGGCATGGTAGGATCCTGAATGGCttcttaaaaaattaaaactaaaaatctcTGGTTTAATTCAGAGTTCACAGCATGTAAATGGCAAATGTCCCCCTTTTTTCTAAATACTGTAGTAAACACACAGCAACATTAAACCCAGTGGTTgaatgggggggaggggtgcgGCTAAGCTATGATTGATGTGGCGGCCGTCCAATCACAGGGCTCTATAAGAAGCCGCAGCAGAAATGGAATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107184 True 1359 lncRNA 0.41 6 17036572 17042575

Neighbor

gene id symbol gene type direction distance location
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding upstream 106895 16922571 ~ 16929677 (+)
AMCG00021418 tbx22,LOC103376188 coding upstream 151693 16875998 ~ 16884879 (+)
AMCG00021419 NA coding upstream 203307 16832282 ~ 16833265 (+)
AMCG00021417 NA coding upstream 229767 16797658 ~ 16806805 (+)
AMCG00021416 NA coding upstream 245720 16778582 ~ 16790852 (+)
AMCG00021424 sh3bgrl coding downstream 5038 17047613 ~ 17063209 (+)
AMCG00021423 NA coding downstream 24038 17066613 ~ 17071130 (+)
AMCG00021429 NA coding downstream 29776 17072351 ~ 17080517 (+)
AMCG00021430 NA coding downstream 40164 17082739 ~ 17097379 (+)
AMCG00021433 pou3f4,LOC108266720 coding downstream 183265 17225840 ~ 17226928 (+)
G85823 NA non-coding upstream 227258 16807806 ~ 16809314 (+)
G85784 NA non-coding upstream 386724 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 439670 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 447161 16586317 ~ 16589411 (+)
G85760 NA non-coding upstream 451807 16584317 ~ 16584765 (+)
G85903 NA non-coding downstream 44177 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 255584 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 416918 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 464951 17507526 ~ 17509083 (+)
G85993 NA non-coding downstream 466510 17509085 ~ 17509295 (+)
G85869 NA other upstream 32441 16997877 ~ 17004131 (+)
G85787 NA other upstream 322534 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 443599 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 962951 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1604208 15428477 ~ 15432364 (+)
AMCG00021441 NA other downstream 427750 17470325 ~ 17473396 (+)
G86121 NA other downstream 1205915 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 2004474 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2237190 19279765 ~ 19294779 (+)
G86407 NA other downstream 2457225 19499800 ~ 19501242 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G102816 NA non-coding NC_053121.1 CM020918.1 2458068 ~ 2533539 (-)
striped catfish (Pangasianodon hypophthalmus) G112653 hmgn5 misc NC_047601.1 CM018547.1 10458825 ~ 10464273 (+)