AMCG00021424 (sh3bgrl)


Basic Information

Item Value
gene id AMCG00021424
gene name sh3bgrl
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17047613 ~ 17063209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021424
GTTTCCGACCTGCTGTTCTGCCAGTGAGCACATCAATATGCACATCATTGTGTGGCTATTGAATGAAAAGCAGTTTGTTTCTGCTGCTGAAGTGACGAGCAGCGAGAGGGAGGAGGGGCGGCGGGACAGCTGTACCAATCGTGCGCCGGCGCCGAGCTGGGCAGTAACTGCGCCTCCGCCTGCGCCTCTATTCGTCTGGGGGACACGAAGAGGAAAAGTTGATCTTTGCATCCCAGTATTTACTGTATCTCTCTTGCACCTTTTTTGTATGCTCGTTGGGAAGGACCTGCATCCGGAGAAACGACTTTTAACCGATAAGCAACCATGGTCATCAAAGTGTACATAGCATCCTCCTCCGGCTCGACTTCGatcaagaagcagcagcaggatGTGATGGGCTTCCTGGCAGCCAATAAGATCGTCTTTGAGGAGTGTGACATCGCCGCTAATGAGGAGAACAGGATGTGGATGAGGGAGAACGTGCCTGAGGACTCGCGGCCGGCCACGGGCAACCCGTTGCCCCCCCAGATCTTCAATGAGCAGCGATACTGTGGTAATTACCAGGCCTTCTTTGATGCCAGGGAAGATAATGCCGTCTACGCATTCCTGGGCCTGACCGCACCCCCGGGGTCAAAGGAAGCAGAGGCCTTGGCCAagttacagcagcagcagcagcagtagttgACGAGCAGCATCCATCGGCTTGCAGCACCCTCTCCTGTTACTCTGTCAGTACTGCGGCTACAGCTGGGATGGTGGGGGCTGAGATGAAGAGTTTCTGAGCTGTTTCTTgttctgcttctgtttttttattattcattttgcactttttttctatttaaatataaaatgaggaaaaaaacaacaaaaacaggaaaaaagaaaaacaagccaaaaatatatttttgttaaagagaggagggaaaatatattgttgagttattgttcattttgtatCTGATGTCTTAATTAAAGAAGTAAATAATAAGGAGTAGGTCCAGATGTTCCCCAAAGATGTAATCGTAACAATAACGGTAATAACATCAATAGCAATCTGCTGTTCATTTACATAGAGATAAACATAAAAAGCATAAGTattcagaatgaaaaacagagtGCTTTACTGCTCTTTATTGCAAATGATTTGTCTTCTCTGCTTGGACTTTTTTCTGGGTGaaatttgtaatatgtatgaATGACTTTAAGGAACTGACCGTGCAGATATGTGTACAGTATAAACATTCCgctgtgtgaaaaacaaaa

Function

symbol description
sh3bgrl Is expressed in several structures, including intestine; nervous system; notochord; otic vesicle; and tail bud. Orthologous to human SH3BGRL (SH3 domain binding glutamate rich protein like).

NR:

description
SH3 domain-binding glutamic acid-rich-like protein

GO: NA

KEGG:

id description
K23740 SH3BGR; SH3 domain-binding glutamic acid-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021424 True 1263 mRNA 0.45 4 17047613 17063209

Neighbor

gene id symbol gene type direction distance location
AMCG00021421 fam46d,LOC100149701,LOC107572331,LOC107674891,LOC107753211,LOC107688579,LOC107564205 coding upstream 117936 16922571 ~ 16929677 (+)
AMCG00021418 tbx22,LOC103376188 coding upstream 162734 16875998 ~ 16884879 (+)
AMCG00021419 NA coding upstream 214348 16832282 ~ 16833265 (+)
AMCG00021417 NA coding upstream 240808 16797658 ~ 16806805 (+)
AMCG00021416 NA coding upstream 256761 16778582 ~ 16790852 (+)
AMCG00021423 NA coding downstream 3404 17066613 ~ 17071130 (+)
AMCG00021429 NA coding downstream 9142 17072351 ~ 17080517 (+)
AMCG00021430 NA coding downstream 19530 17082739 ~ 17097379 (+)
AMCG00021433 pou3f4,LOC108266720 coding downstream 162631 17225840 ~ 17226928 (+)
AMCG00021431 NA coding downstream 178473 17241682 ~ 17250316 (+)
G85876 NA non-coding upstream 5038 17036572 ~ 17042575 (+)
G85823 NA non-coding upstream 238299 16807806 ~ 16809314 (+)
G85784 NA non-coding upstream 397765 16647139 ~ 16649848 (+)
G85766 NA non-coding upstream 450711 16596201 ~ 16596902 (+)
G85763 LOC105929187 non-coding upstream 458202 16586317 ~ 16589411 (+)
G85903 NA non-coding downstream 23543 17086752 ~ 17087794 (+)
G85941 NA non-coding downstream 234950 17298159 ~ 17298813 (+)
G85976 NA non-coding downstream 396284 17459493 ~ 17459941 (+)
G85992 NA non-coding downstream 444317 17507526 ~ 17509083 (+)
G85993 NA non-coding downstream 445876 17509085 ~ 17509295 (+)
G85869 NA other upstream 43482 16997877 ~ 17004131 (+)
G85787 NA other upstream 333575 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 454640 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 973992 16063499 ~ 16073621 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 1615249 15428477 ~ 15432364 (+)
AMCG00021441 NA other downstream 407116 17470325 ~ 17473396 (+)
G86121 NA other downstream 1185281 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 1983840 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 2216556 19279765 ~ 19294779 (+)
G86407 NA other downstream 2436591 19499800 ~ 19501242 (+)

Expression


Co-expression Network