XLOC_006301 (LT631684.1)


Basic Information

Item Value
gene id XLOC_006301
gene name LT631684.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51853716 ~ 51881759 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012296
GtgtcatttcaaaacaaaaacaaaacaccaaaacacctctgtggtgacccctgatgaataaagagactaagctgaagagaaattaatgaatgagtgatgatgatgatggtgatgatgatgatgatggtggtgtgGGTGTATCAGCGCCCCCTGTCGGCCGGTGGCTGTGCTGTAGCTCCGCCTGTCGGGTCTCCGACTCGCCGCTGCTCCGCCGGTGCTCAGTGAGTGTCGGTGAGAGTgagccggtgagtgtgtgtgtccgcGGGTCTacgccggtgagtgtgtgtgtctgagccgGTGTGTGTTTCCGCGGGTCGGTGATGATGGCGGCGGCGCTGGACAGAGGAGGACAGCGGGTGATCCCGGCAGCGGATCCGGTGTCCGGTGCTCTGCTGTGCGGCTCCGGCTCCACACCCGTCCCGATGAACCTCTTCGCCACCTGGGAGATCGACCGCTCGTCCCCGAGCTGCGTGccgaggctGTGCAGTCTGACGCTGAAGAGGCTGATCGTGTTGAAGGAGCTGGATAAAGATCTGAACTCAGTGCTCATCGCTGTGAAGATTCAGGGCTCCAAACGAGTGCTGCGGTCAAACGAGTATGCTCTTCCTCCCAGTGGTGTGATGGAGACGGAGCTGGAGCTCACCTTCTCTCTGCAGTATCCTCACTTTCTGAAGAGAGACGCCAACCGCCTGCAGATCATGCTCCAGAGAAGGAAACGCTACAAAAACAGAACCATTCTGGGCTACAAGACGCTGGCTGTGGGAGTCATCAACATGGCCGAGGTGCTCCAGCATCCCACAGAGGGAGGTCAGATTCTGCATCTCCACGGCAACATGAAGGATGCTCCGACACGGCTGGCTGAAATCAGTGTGTTCTCACTGTCCAGCCAACCCATAGACCACGAGTACAGCAGCGGCACGGGCGGAGCCGCCATCAAAGCCTCGgatcGTTCTCCTGATATGGATAATTACTCAGAGGATGATGAGGACAGTTATTCATCAGAGCAGGAGGGCAGTGATGATGCTGGACACACACaaGATCTgtatgatgaggatgatgatttaCGAAAGCCCAAAAAACCCCGACGGAAGATGACCAGATCCTTCTCCATGACACGACAGCCCAATTTCAAGCAGAAGTTTGTGGCTTTACTGAAGAGATTCAAGGTGTCAGACGAGGTGCTGGACTCGGACCCGGTGGAGCAGACgcaggaggtggaggaggaggatctGGACCTGCTGTACGACAGTCTGGAGGTGTTCAACCAGAGCGACAGCGGGCCGGAGCTGGAGGACACCGACAGCCTGCTGAGCACACCCAAACCCAAACTCAGGCCGTTCTTCGAGGGCATGTCTCACTCCAGCTCCCAAACCGAGATCAGCAGCGTTCACAGCCAACACACAGCGCTCAACACGGAGGCTGACGCagagcatcatgggatagcgatGGCGGATGTGTTGGAGAGCAGCAGCGATcgattgaacatctctggaggaAAACTCTGCAAGTCTGAGTCTCAGAACCACAGtaAAGCAGAGGTCAGGGCTCCGCGGCGGATCCGCAGCACCTCCATGAAGGACAGACAGAACTCTCGAGCTCAGAGTGAACGCACCATCAGCATGGACAGTCAATACACACCCCACAGCCGCTTCACTGcacaggttccCAGGAAGTCTGTGTATGACCAGCTGAACCAGATCCTGATCTCAGATGAGAGACTCCCAGAGAACATCATCCTCATCAACACAGTCGACTGGCAgggccagtatgTGGCAGAGATCCTGCAGAAGCACACTCAGCCCATAGTGTCCACCTGCTCTGCTGCTGACGTCCAGGCCGCATTCAACACCATCGTAACACGCATTCAGAGATTCTGTAACTGTAACGCCCAGACTCCGCCCACTGTTAAAGTGGCAGTGACGGGCGATCAGAGCTACCTCAGCACGGTGCTGCGCTTCTTTGTGGAGCAGCTGGCTAACAAGACGCCTGATTGGCTGAGCTACATCCGCTTTCTGATCATCCCCATCGGTTCTCATCCGCTGGCCAAATACATGGCGTCATTCGACAGTAAGTTCAGCAGCATGTTCATGGAGCCATCGTGGAGGGAGCTGTTCTGCCGGCCAGAACCCCCGAACACAGACTCTGTGGATGTAGCTGGACGGATCATCCAGTATCTGGCCGGAGCCAATGTGTGTCACCAGTTCCCCATCTCTGAGGCCATGCTGACCTACAGACAGAAGAGGTACACCTGCGCTCACACACTCCTGCACACACAGTGCTGCCGTTAG
>TCONS_00012295
GtgtcatttcaaaacaaaaacaaaacaccaaaacacctctgtggtgacccctgatgaataaagagactaagctgaagagaaattaatgaatgagtgatgatgatgatggtgatgatgatgatgatggtggtgtgGGTGTATCAGCGCCCCCTGTCGGCCGGTGGCTGTGCTGTAGCTCCGCCTGTCGGGTCTCCGACTCGCCGCTGCTCCGCCGGTGCTCAGTGAGTGTCGGTGAGAGTgagccggtgagtgtgtgtgtccgcGGGTCTacgccggtgagtgtgtgtgtctgagccgGTGTGTGTTTCCGCGGGTCGGTGATGATGGCGGCGGCGCTGGACAGAGGAGGACAGCGGGTGATCCCGGCAGCGGATCCGGTGTCCGGTGCTCTGCTGTGCGGCTCCGGCTCCACACCCGTCCCGATGAACCTCTTCGCCACCTGGGAGATCGACCGCTCGTCCCCGAGCTGCGTGccgaggctGTGCAGTCTGACGCTGAAGAGGCTGATCGTGTTGAAGGAGCTGGATAAAGATCTGAACTCAGTGCTCATCGCTGTGAAGATTCAGGGCTCCAAACGAGTGCTGCGGTCAAACGAGTATGCTCTTCCTCCCAGTGGTGTGATGGAGACGGAGCTGGAGCTCACCTTCTCTCTGCAGTATCCTCACTTTCTGAAGAGAGACGCCAACCGCCTGCAGATCATGCTCCAGAGAAGGAAACGCTACAAAAACAGAACCATTCTGGGCTACAAGACGCTGGCTGTGGGAGTCATCAACATGGCCGAGGTGCTCCAGCATCCCACAGAGGGAGGTCAGATTCTGCATCTCCACGGCAACATGAAGGATGCTCCGACACGGCTGGCTGAAATCAGTGTGTTCTCACTGTCCAGCCAACCCATAGACCACGAGTACAGCAGCGGCACGGGCGGAGCCGCCATCAAAGCCTCGgatcGTTCTCCTGATATGGATAATTACTCAGAGGATGATGAGGACAGTTATTCATCAGAGCAGGAGGGCAGTGATGATGCTGGACACACACaaGATCTgtatgatgaggatgatgatttaCGAAAGCCCAAAAAACCCCGACGGAAGATGACCAGATCCTTCTCCATGACACGACAGCCCAATTTCAAGCAGAAGTTTGTGGCTTTACTGAAGAGATTCAAGGTGTCAGACGAGGTGCTGGACTCGGACCCGGTGGAGCAGACgcaggaggtggaggaggaggatctGGACCTGCTGTACGACAGTCTGGAGGTGTTCAACCAGAGCGACAGCGGGCCGGAGCTGGAGGACACCGACAGCCTGCTGAGCACACCCAAACCCAAACTCAGGCCGTTCTTCGAGGGCATGTCTCACTCCAGCTCCCAAACCGAGATCAGCAGCGTTCACAGCCAACACACAGCGCTCAACACGGGATGTGACTTCCTGTCAGTGGACCGGAGCAAGAAGACCAGCAGCAGACAGCAGGAGGACAGCAGCATGGAGACCAGCGGCGGGGAGGCTGACGCagagcatcatgggatagcgatGGCGGATGTGTTGGAGAGCAGCAGCGATcgattgaacatctctggaggaAAACTCTGCAAGTCTGAGTCTCAGAACCACAGtaAAGCAGAGGTCAGGGCTCCGCGGCGGATCCGCAGCACCTCCATGAAGGACAGACAGAACTCTCGAGCTCAGAGTGAACGCACCATCAGCATGGACAGTCAATACACACCCCACAGCCGCTTCACTGcacaggttccCAGGAAGTCTGTGTATGACCAGCTGAACCAGATCCTGATCTCAGATGAGAGACTCCCAGAGAACATCATCCTCATCAACACAGTCGACTGGCAgggccagtatgTGGCAGAGATCCTGCAGAAGCACACTCAGCCCATAGTGTCCACCTGCTCTGCTGCTGACGTCCAGGCCGCATTCAACACCATCGTAACACGCATTCAGAGATTCTGTAACTGTAACGCCCAGACTCCGCCCACTGTTAAAGTGGCAGTGACGGGCGATCAGAGCTACCTCAGCACGGTGCTGCGCTTCTTTGTGGAGCAGCTGGCTAACAAGACGCCTGATTGGCTGAGCTACATCCGCTTTCTGATCATCCCCATCGGTTCTCATCCGCTGGCCAAATACATGGCGTCATTCGACAGTAAGTTCAGCAGCATGTTCATGGAGCCATCGTGGAGGGAGCTGTTCTGCCGGCCAGAACCCCCGAACACAGACTCTGTGGATGTAGCTGGACGGATCATCCAGTATCTGGCCGGAGCCAATGTGTGTCACCAGTTCCCCATCTCTGAGGCCATGCTGACCTACAGACAGAAGAGGTACACCTGCGCTCACACACTCCTGCACACACAGTGCTGCCGTTAG
>TCONS_00013442
tgaatgagtgatgatgatgatggtgatgatgatgatgatggtggtgtgGGTGTATCAGCGCCCCCTGTCGGCCGGTGGCTGTGCTGTAGCTCCGCCTGTCGGGTCTCCGACTCGCCGCTGCTCCGCCGGTGCTCAGTGAGTGTCGGTGAGAGTgagccggtgagtgtgtgtgtccgcGGGTCTacgccggtgagtgtgtgtgtctgagccgGTGTGTGTTTCCGCGGGTCGGTGATGATGGCGGCGGCGCTGGACAGAGGAGGACAGCGGGTGATCCCGGCAGCGGATCCGGTGTCCGGTGCTCTGCTGTGCGGCTCCGGCTCCACACCCGTCCCGATGAACCTCTTCGCCACCTGGGAGATCGACCGCTCGTCCCCGAGCTGCGTGccgagGACTGTTTCAGAGGGATGTAGGTCACAACAGAGGAGAAGTGGACAGTCTTAATGTGCTGCAGCTGATTATAGCACACAGCGGACACACTGTGAGAGTGAACAGCCAGATCAGCACAGCAGCAATATTAGAACAGCTGCTGCAGGGTTCATGTCAAGAAAAGCAGAGTCTGACACTCAGTGTGCTGTCCTGAACGCATCAGAGATGGAGGATCTGCTgttactgatgatgatgatgatgatgatggtgatgatggtgatcTGGGAGACAGCATGTGCTCTGAGCTCAGCTTAATACCCACAGCCTCTCATCTGGATCTGTGTCTGTGATTGTAGGACACAGCATAtaaatcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctctgaTAGGATAATgtgacgagtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgctctgatgGGATAATgtgacgagtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgctctgATGGGATAATgtgacgagtgtgtgtgtgtgtgtgtgtgtgcgtgctctgATGGGATAATgtgacgagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtcagtAATGCAGgattcattcatcatattcattcaGAGAATTAAAGCTCAGTGTGTGGATCCGCCATCTGCTGCCGAGGGAAAGATCCTGAAAACACCACGGCCTGCGCTGCTTCACTCGTCTTCATTTTACACCAGCTCACTTTACTTTATTCATCAACTTtagaaataaaacagaacaaaacagtttTTGCTTCATTATTTGGCTTTGAGTTATTTAGtgtactgctttatttatttcaatCCACTTTTTAtctgtaagtaaataaataatcttgttttctgtgtgttgtgtgtttgtgttgtgtgttgtgttgtgtgtgtttgtgttgtgtttgtgttgtgttgtgtatgtttgtgttgtgtgtgtttgtttgtgttgtgtgtgtttgtgttgtgtgtttgtgtgatgttTGTCTGATGTTTACTCATCATCATAGATGCTCTTTCCTGCTCGAGCTTCTTCAGGACTC
>TCONS_00012297
ATGGAGACGGAGCTGGAGCTCACCTTCTCTCTGCAGTATCCTCACTTTCTGAAGAGAGACGCCAACCGCCTGCAGATCATGCTCCAGAGAAGGAAACGCTACAAAAACAGAACCATTCTGGGCTACAAGACGCTGGCTGTGGGAGTCATCAACATGGCCGAGGTGCTCCAGCATCCCACAGAGGGAGGTCAGATTCTGCATCTCCACGGCAACATGAAGGATGCTCCGACACGGCTGGCTGAAATCAGTGTGTTCTCACTGTCCAGCCAACCCATAGACCACGAGTACAGCAGCGGCACGGGCGGAGCCGCCATCAAAGCCTCGgatcGTTCTCCTGATATGGATAATTACTCAGAGGATGATGAGGACAGTTATTCATCAGAGCAGGAGGGCAGTGATGATGCTGGACACACACaaGATCTgtatgatgaggatgatgatttaCGAAAGCCCAAAAAACCCCGACGGAAGATGACCAGATCCTTCTCCATGACACGACAGCCCAATTTCAAGCAGAAGTTTGTGGCTTTACTGAAGAGATTCAAGGTGTCAGACGAGGTGCTGGACTCGGACCCGGTGGAGCAGACgcaggaggtggaggaggaggatctGGACCTGCTGTACGACAGTCTGGAGGTGTTCAACCAGAGCGACAGCGGGCCGGAGCTGGAGGACACCGACAGCCTGCTGAGCACACCCAAACCCAAACTCAGGCCGTTCTTCGAGGGCATGTCTCACTCCAGCTCCCAAACCGAGATCAGCAGCGTTCACAGCCAACACACAGCGCTCAACACGGGATGTGACTTCCTGTCAGTGGACCGGAGCAAGAAGACCAGCAGCAGACAGCAGGAGGACAGCAGCATGGAGACCAGCGGCGGGGAGGCTGACGCagagcatcatgggatagcgatGGCGGATGTGTTGGAGAGCAGCAGCGATcgattgaacatctctggaggaAAACTCTGCAAGTCTGAGTCTCAGAACCACAGtaAAGCAGAGGTCAGGGCTCCGCGGCGGATCCGCAGCACCTCCATGAAGGACAGACAGAACTCTCGAGCTCAGAGTGAACGCACCATCAGCATGGACAGTCAATACACACCCCACAGCCGCTTCACTGcacaggttccCAGGAAGTCTGTGTATGACCAGCTGAACCAGATCCTGATCTCAGATGAGAGACTCCCAGAGAACATCATCCTCATCAACACAGTCGACTGGCAgggccagtatgTGGCAGAGATCCTGCAGAAGCACACTCAGCCCATAGTGTCCACCTGCTCTGCTGCTGACGTCCAGGCCGCATTCAACACCATCGTAACACGCATTCAGAGATTCTGTAACTGTAACGCCCAGACTCCGCCCACTGCTAAAGTGCCAGTGcgatcagagtgtgtgtgtgtgtgtgtgtgtaagaattaG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000108326

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012296 False 2288 mRNA 0.56 17 51853716 51881759
TCONS_00012295 False 2372 mRNA 0.56 18 51853716 51881759
TCONS_00013442 False 1520 lncRNA 0.49 2 51853802 51865510
TCONS_00012297 True 1422 mRNA 0.55 14 51869025 51881011

Neighbor

gene id symbol gene type direction distance location
XLOC_006300 NA coding upstream 58315 51741554 ~ 51795401 (+)
XLOC_006299 pwwp2b coding upstream 122418 51710725 ~ 51731298 (+)
XLOC_006298 NA coding upstream 228149 51617783 ~ 51625567 (+)
XLOC_006297 nkx6.2 coding upstream 269452 51579851 ~ 51584264 (+)
XLOC_006296 NA coding upstream 391049 51444994 ~ 51462667 (+)
XLOC_006302 lclat1 coding downstream 74638 51956397 ~ 51963460 (+)
XLOC_006303 klhdc3 coding downstream 100005 51981764 ~ 51988216 (+)
XLOC_006304 npas4l coding downstream 124494 52006253 ~ 52017013 (+)
XLOC_006305 CABZ01089777.1 coding downstream 179275 52061034 ~ 52069970 (+)
XLOC_006306 CABZ01092745.1 coding downstream 190212 52071971 ~ 52105015 (+)
XLOC_006295 NA non-coding upstream 413823 51433834 ~ 51439893 (+)
XLOC_006294 CABZ01094390.1 non-coding upstream 422399 51428398 ~ 51431317 (+)
XLOC_006307 NA non-coding downstream 239078 52120837 ~ 52136375 (+)
XLOC_006308 NA non-coding downstream 288190 52169949 ~ 52174571 (+)

Expression


Co-expression Network