XLOC_006303 (klhdc3)


Basic Information

Item Value
gene id XLOC_006303
gene name klhdc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51981764 ~ 51988216 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012299
ATGTTACGCTGGTCGGTTCACCTGGAGGGCGGCCCGCGGCGGGTCAATCACGCTGCAGTGTCAGTGGGACACAAGGTGTACTCGTTTGGGGGATACTGCTCCGGGGAGGACTACGAGACCCTGCGGCAGATCGACGTGCACGTCTTCAACACCGtgtcTCTGCGCTGGACAAAGCTGCCGCCAGTGCGCACTGGAGGTAGGGAGCATGCTCGTGAAGTGCCCTACATGCGCTATGGACACACTGCAGTGCTGGCAGACGACACCATACTGATCTGGGGCGGACGCAACGACACCGAGGGGGCCTGCAACGTGCTGTACgccttcgacatcaACCAGCACCGATGGTTCACACCCAAGATCTCTGGCACAGTTCCAGGAGCGCGAGACGGACACTCAGCCTGTGTTCTGGGAAAAGCCATGTACATCTTTGGAGGATACGAGCAGCTGgccgACTGCTTCTCCAATGAGATCCACAAGCTGGACACCTCCAACATGTGCTGGTCACTGGTGAACGCCcgggggaCACCGGCGCGATGGAGAGACTTCCACTCGGCCACCATCATCGGCACTAAGATGTTTGTGTTCGGGGGCCGCGCAGACCGCTTCGGGCCCTTCCACTCCAACAACGAGATCTACTGCATAAGATCAAGATCTTCGACACCGAGACCAACAGCTGGATGA

Function

symbol description
klhdc3 Predicted to enable chromatin binding activity. Predicted to be active in cytoplasm. Orthologous to human KLHDC3 (kelch domain containing 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2426 Predicted to enable chromatin binding activity. Predicted to be active in cytoplasm. Orthologous to human KLHDC3 (kelch domain containing 3).

Ensembl:

ensembl_id ENSDARG00000102772

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012299 True 681 mRNA 0.59 6 51981764 51988216

Neighbor

gene id symbol gene type direction distance location
XLOC_006302 lclat1 coding upstream 18304 51956397 ~ 51963460 (+)
XLOC_006301 LT631684.1 coding upstream 100005 51853716 ~ 51881759 (+)
XLOC_006300 NA coding upstream 186363 51741554 ~ 51795401 (+)
XLOC_006299 pwwp2b coding upstream 250466 51710725 ~ 51731298 (+)
XLOC_006298 NA coding upstream 356197 51617783 ~ 51625567 (+)
XLOC_006304 npas4l coding downstream 18037 52006253 ~ 52017013 (+)
XLOC_006305 CABZ01089777.1 coding downstream 72818 52061034 ~ 52069970 (+)
XLOC_006306 CABZ01092745.1 coding downstream 83755 52071971 ~ 52105015 (+)
XLOC_006307 NA coding downstream 132621 52120837 ~ 52136375 (+)
XLOC_006308 NA coding downstream 181733 52169949 ~ 52174571 (+)
XLOC_006296 NA non-coding upstream 519097 51444994 ~ 51462667 (+)
XLOC_006295 NA non-coding upstream 541871 51433834 ~ 51439893 (+)
XLOC_006294 CABZ01094390.1 non-coding upstream 550447 51428398 ~ 51431317 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_03250547_03255754 KLHDC3 coding CI01180000 null 3250547 ~ 3255868 (+)