CI01000000_02334112_02352906


Basic Information

Item Value
gene id CI01000000_02334112_02352906
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2333555 ~ 2353369 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_02334112_02352906.mRNA
TCATAAATGTGGCCCTCACAAGCACAGACACACATGTGCATTCAGCTTGAGCTCAGATTCTGCATCTAAAGTAACCTTCCCTTATGTTTCAGCTAAAGATGACAAGTTGCTAGCTATATTCTTTATGTATGAAGTCAGCTTTATATCATAACACATGTCTCCATATATAACTCTTACAGCCAATGACCTGTTAAACATCTGGAGGGGTTCAAAGAGCACTTATTCATTGAGTATTTCTCTCTTTTTCTCTCTGTAGGCCCTCTACAGTTTGTTTCTGGTTTAACACACACCCTTCCTCCATCTTCATCCATCCATCTCCTCTTCCCTCGCTTCCTCGCTGCTTGTGTCCAGAGAAAGGAACGTTCACCGACACATCTCACACCCGTAGCGCTGCAGGCAGTTTCTCTCTCTCTCTCTCTCTCTCTCTGGGCAGAAAAGTCCTGCCTGTGTAAAGGAGGTTCCGTTGGGAGCGCAGGCTTTGGACGCAGGCCCAGATCAATGTGACCTAAATTCAAATGCGAATTAGAAGGCTGTCAGTGGGAAAGGACACTCTGCAAATGAGCTCAGACAGTACGGGGCCCCTCGGGGGCAAGCCGAACCTGGGCCTCGCCCCGCCTCGCCGTTTTAATAAGTTCCAAATGGGCGACCTGGCTGCAGCGTTTCTGATCGGCTCGCCGCCCCTCCACCTCTATCTCGGAGGCTGCTCGCCGCCTTCGCACCCAGAGCACGAGAGCGGTGGGGCCTCGGCAGGGTCCACTGACTACAGGCTTACCGACACACCTGGAGGAACCTGCCCAAGGTCACTGGAGAAATTTCAGCGAGAGAGGAAATACCAGAGCTTTCTAATGGGAGTGAGTCTTGATTGCTCTAATGGCTTAAACTGGAACATACTGGAGCAGCGTCTGATGGATATATTATGTGAATTTTATGGCTCAGTTCAAGCTGTGAAACACAATAGTGTAGTTATCTTCTGCGTGCCTTTGGGTGCTCCGACAGCCCATTGTCTCTCCAAGAAAAGCCTCACGGCCCGCTGTAAATCTGCCACGGAACGAGAAGCTCTCCTACGCGGATGCCGCCACAGCCTCGCTGGCCAAATCCCTGACTTGGCCAGTGCTGTTTGCTTTTTGGCAGGTGTCTGCAGCTCACGTCTGCTGAGTCCATCAGAGGGGTTGGCGTTATTGGGAAGCATTCACTCCCTGCCTCCATTTCCTGTCCTGTCTAATCGCTTCCAGACGAGAGCGACCATAGCGCAACACATGGTTTTGATGGGCCGATGTGATATTTCCAGAGCTCCTTCAATGATCATGGCTTCCCTGGCTAGAGGTTTGGACTTCTCTGATACCATCCATTTCTGGACATGTGATACAATAATCATGTGGCACATTAGATATGACAGCATAGAAATTTTCACATTTGACCAGTCCAAGCTATGTGGCAAAACAACAAATATCTAATGTAAA
>TU1657
TGTAATCTTTATTTTTCAGTTTCTGTACAAAAAGCACGGGATCACAGGAAAAAAATCTGAAATAAAAACCAAGGAAAAAACATGCATTTATTTACAGCATGGTCAGAGAGAAAAAAGGAAAGTAGAATACATCTCCCTATCTGAATTCTAAAGACATTAATTAAACATTGTGCTTTCATATATTTTGATATAATATTTCATATTTCACAAAGATGCAGTACCTTTCTCCATTTCACTTTGAGTTCAACATTTCCAAAGAAAACAGGTTTTGAAAAAGAAAGCAGAAGCCAGCTCTCTACATCTATGACAAAAAACCTTTCACAAGCTATTAGGAAACTCAATGCATGGGTGAAATGGATGGACGTGTCTATGTGTGTGTGTGTGTGAGACTGTTTCCAGGCAAGCTGGATCTCTGAGATGTTTTCATGTGAACTTTGAGATTGAATTCAGCTGTTGTAGTATAATAGGGCACTGTCAAAATTGTATTTTTTTTTATTTATTTTTTTTACCCCATTTATGTCTAAACCCCAAAAGGATGAAAATGAAGTAATTAGGTCACCTGTGAAATTAAAAGAGGTCTTCAGAAACCACAATTTCTTTCACGTCATCTTTGCAAACACACACCTTCACATACTTCAAGAAAATAGGGAAAAACCATGACTGGAATATTAAAATTTTACGTTGTTTCCAAGTGTTCACAGTCAGTGATATTTGGTCGTGTCCAATCAAAGAAACCAACTTTATGAAGATGACAACCTGCAATGTGATGATCACCTATGTCATATTTCCTCAATGATTTTCCACATTTTCTCTACTGAGACTTTTGCCATTCTCTACTGAGAATATTTTTAAGATATAGACTATTTTGTTTTCTTGATTTGTGATTTGAGACACTGTTGGAGCACATCCTACTTTAAGGCATCATGATATCTCCTTCCATTATTTAATTTCACAGCTAATCCACTGAAATGTGGATAGCGAGTTGCATTTAAATACAGATTGCATAAGTTGTGCATGTGTGTGCAACAATAGTAACAATATCACCAGCAACACCGACGTCACTCAATGGTTCCACGTCAAAATGTGCTCTGTTTTAACAGGTTTGGACTTCTCTGATACCATCCATTTCTGGACATGTGATACAATAATCATGTGGCACATTAGATATGACAGCATAGAAATTTTCACATTTGACCAGTCCAAGCTATGTGGCAAAACAACAAATATCTAATGTAAAATAAACCTCAACAAGGACAGAGAAGTATTATGGAAACATTTTTGAAACATCAACAAAATCACATGATGAACGATTTCATGACCAAAGCAAAGAGTAATCAATCCAAAAAATCATCTGAAAACATACTGGTGCATATTTGTATAAGTTCTTCTCTTTTTTTTTTGTTCTTTTTTTTTTTATTACCATTATTATTTTCTTCTGCTTGCTAAGATACATAGCTCTTGTAAGTGCCCCAACAAAAATAGTGCATTAGGAAATAACTATGATCATACACGTTTCACAAGAACACACAAGACAAGAGGAGGAACAAGAACACAAACGCTGTTTGCAAAAAGAAAACATTAAATATACGACTGAAAAAATGTTTTGTCGTTTTTTTTTTTGTTTGTTTGTTTGTTTTTTACAAAAGTGGTGAAGCTTTACACCCTGCTTTCAAAAAACAGGTGTTCTGGTCATG
>TU1660
TCACAGGAAAAAAATCTGAAATAAAAACCAAGGAAAAAACATGCATTTATTTACAGCATGGTCAGAGAGAAAAAAGGAAAGTAGAATACATCTCCCTATCTGAATTCTAAAGACATTAATTAAACATTGTGCTTTCATATATTTTGATATAATATTTCATATTTCACAAAGATGCAGTACCTTTCTCCATTTCACTTTGAGTTCAACATTTCCAAAGAAAACAGGTTTTGAAAAAGAAAGCAGAAGCCAGCTCTCTACATCTATGACAAAAAACCTTTCACAAGCTATTAGGAAACTCAATGCATGGGTGAAATGGATGGACGTGTCTATGTGTGTGTGTGTGTGAGACTGTTTCCAGGCAAGCTGGATCTCTGAGATGTTTTCATGTGAACTTTGAGATTGAATTCAGCTGTTGTAGTATAATAGGGCACTGTCAAAATTGTATTTTTTTTTATTTATTTTTTTTACCCCATTTATGTCTAAACCCCAAAAGGATGAAAATGAAGTAATTAGGTCACCTGTGAAATTAAAAGAGGTCTTCAGAAACCACAATTTCTTTCACGTCATCTTTGCAAACACACACCTTCACATACTTCAAGAAAATAGGGAAAAACCATGACTGGAATATTAAAATTTTACGTTGTTTCCAAGTGTTCACAGTCAGTGATATTTGGTCGTGTCCAATCAAAGAAACCAACTTTATGAAGATGACAACCTGCAATGTGATGATCACCTATGTCATATTTCCTCAATGATTTTCCACATTTTCTCTACTGAGACTTTTGCCATTCTCTACTGAGAATATTTTTAAGATATAGACTATTTTGTTTTCTTGATTTGTGATTTGAGACACTGTTGGAGCACATCCTACTTTAAGGCATCATGATATCTCCTTCCATTATTTAATTTCACAGCTAATCCACTGAAATGTGGATAGCGAGTTGCATTTAAATACAGATTGCATAAGTTGTGCATGTGTGTGCAACAATAGTAACAATATCACCAGCAACACCGACGTCACTCAATGGTTCCACGTCAAAATGTGCTCTGTTTTAACAGGTTTGGACTTCTCTGATACCATCCATTTCTGGACATGTGATACAATAATCATGTGGCACATTAGATATGACAGCATAGAAATTTTCACATTTGACCAGTCCAAGCTATGTGGCAAAACAACAAATATCTAATGTAAAATAAACCTCAACAAGGACAGAGAAGTATTATGGAAACATTTTTGAAACATCAACAAAATCACATGATGAACGATTTCATGACCAAAGCAAAGAGTAATCAATCCAAAAAATCATCTGAAAACATACTGGTGCATATTTGTATAAGTTCTTCTCTTTTTTTTTTGTTCTTTTTTTTTTTATTACCATTATTATTTTCTTCTGCTTGCTAAGATACATAGCTCTTGTAAGTGCCCCAACAAAAATAGTGCATTAGGAAATAACTATGATCATACACGTTTCACAAGAACACACAAGACAAGAGGAGGAACAAGAACACAAACGCTGTTTGCAAAAAGAAAACATTAAATATACGACTGAAAAAATGTTTTGTCGTTTTTTTTTTTGTTTGTTTGTTTGTTTTTTACAAAAGTGGTGAAGCTTTACACCCTGCTTTCAAAAAACAGGTGTTCTGGTCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_02334112_02352906.mRNA False 1460 mRNA 0.50 5 2333555 2352912
TU1657 False 1694 lncRNA 0.33 1 2351676 2353369
TU1660 True 1653 lncRNA 0.37 1 2351717 2353369

Neighbor

gene id symbol gene type direction distance location
CI01000000_02237986_02243555 NA coding upstream 89735 2237694 ~ 2243820 (+)
CI01000000_02092375_02096188 POLR2B.L, RPB2, POLR2B coding upstream 237367 2092293 ~ 2096188 (+)
CI01000000_02080057_02086228 REST coding upstream 246045 2079831 ~ 2087510 (+)
CI01000000_02018856_02033091 EXOSC3 coding upstream 299176 2018597 ~ 2034379 (+)
CI01000000_01996254_01997531 GPR151 coding upstream 335938 1996074 ~ 1997617 (+)
CI01000000_02496792_02498535 NA coding downstream 143832 2496744 ~ 2498594 (+)
CI01000000_02516813_02517287 NA coding downstream 163901 2516813 ~ 2517787 (+)
CI01000000_02534790_02541012 NA coding downstream 181878 2534790 ~ 2541023 (+)
CI01000000_02553141_02553901 NA coding downstream 199863 2552775 ~ 2554149 (+)
CI01000000_02571143_02579505 NA coding downstream 218231 2571143 ~ 2579505 (+)
G1470 NA non-coding upstream 26890 2306406 ~ 2306665 (+)
G1448 NA non-coding upstream 54915 2278390 ~ 2278640 (+)
G1439 NA non-coding upstream 64959 2268384 ~ 2268596 (+)
G1403 NA non-coding upstream 92898 2240290 ~ 2240657 (+)
G1388 NA non-coding upstream 106360 2226995 ~ 2227195 (+)
G1509 NA non-coding downstream 238225 2591137 ~ 2595445 (+)
CI01000000_02639274_02651177 DDX41 non-coding downstream 297853 2639274 ~ 2651578 (+)
G1604 NA non-coding downstream 346762 2699674 ~ 2699896 (+)
G1617 NA non-coding downstream 409429 2762341 ~ 2762558 (+)
G1645 NA non-coding downstream 475459 2828371 ~ 2828613 (+)
G579 NA other upstream 424747 1767917 ~ 1908808 (+)
G435 NA other upstream 900701 1425121 ~ 1432854 (+)
G350 NA other upstream 1656618 671842 ~ 676937 (+)
G252 NA other upstream 1826483 503209 ~ 507072 (+)
G2774 NA other downstream 2100866 4453778 ~ 4454232 (+)
G2850 NA other downstream 2373074 4725986 ~ 4726482 (+)
G6811 NA other downstream 7851919 10204831 ~ 10321679 (+)
G6820 NA other downstream 8074311 10427223 ~ 10433018 (+)
G7018 NA other downstream 8625577 10978489 ~ 10980872 (+)
G1475 NA non-coding upstream 1168 2348793 ~ 2349665 (+)

Expression


Co-expression Network