CI01000000_02092375_02096188 (POLR2B.L, RPB2, POLR2B)


Basic Information

Item Value
gene id CI01000000_02092375_02096188
gene name POLR2B.L, RPB2, POLR2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2092293 ~ 2096188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_02092375_02096188.mRNA
ACATAAAAGCGCCGTTTAGTGGGGTGCGCGGATAAACTCCTTGTAGTTTAATCAGAAATAGAGTTATTCACCGGTAAATATCATGTATGATCAAGACGAAGATATCCAGTATGATGAAGATGATGATGAAATCACCCCTGATCTGTGGCAGGAGGCCTGTTGGATTGTTATCAGCTCATATTTTGACGAAAAAGGTTTGGTGCGACAGCAGCTGGACTCATTCGATGAGTTCATCCAGATGTCTGTGCAGAGGATTGTGGAGGATGCTCCACCCATTGACCTGCAGGCTGAGGCCCAGCACACATCTGGAGAGGTGGAGGAACCGCCTCGGTACTTGCTGAAGTTTGAGCAAATCTACCTGTCCAAACCCACTCACTGGGAAAGAGATGGTGCTCCCTCACCTATGATGCCAAACGAAGCCAGACTCCGAAATCTCACGTATTCTGCTCCTCTGTATGTGGACATTACAAAGACCATCATAAAGGATGGGGAAGAGCAACAGCAGACCCAGCATCAGAAAACGTTTATCGGCAAAATTCCCATCATGCTCCGTTCCACATACTGTCTGCTGAGCGGCCTGACAGATCGTGATCTTTGTGAGTTGAACGAGTGCCCACTGGACCCTGGAGGCTACTTCATCATCAATGGTTCAGAGAAGGTCCTGATTGCTCAAGAGAAGATGGCCACTAACACAGTGTATGTGTTTGCCAAGAAAGACTCCAAGTATGCTTACACTGGAGAGTGCAGGTCATGTCTGGAGAACTCCTCCAGACCCACCAGCACCATCTGGGTTAGCATGATGGCCCGTGGAGGACAGGGAGTAAAGAAAAGTGCCATCGGCCAGAGGATTGTATCCACTCTGCCGTACATCCGGCAGGAAGTTCCCATCATAATTGTGTTCCGTGCTTTGGGATTTGTGTCTGATAGAGACATTTTGGAACACATCATCTATGACTTTGATGATCCTGAGATGATGGAGATGGTGAAGCCATCTTTGGACGAGGCCTTTGTGATTCAGGAACAGAATGTGGCTCTGAACTTCATTGGCTCCAGAGGGGCTAAACCTGGTGTCACCAAAGAAAGAAGAATCAAATATGCTAAAGAGGTTTTGCAGAAGGAGGTGTTGCCACATGTTGGTGTATCAGATTTCTGCGAGACTAAGAAAGCATATTTTCTAGG

Function

symbol description
polr2b Predicted to enable several functions, including DNA binding activity; metal ion binding activity; and ribonucleoside binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2B (RNA polymerase II subunit B).
rpb2 Enables DNA binding activity. Contributes to RNA polymerase II activity and RNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in cytoplasmic stress granule; mitochondrion; and nucleus. Part of RNA polymerase II, core complex. Orthologous to human POLR2B (RNA polymerase II subunit B).

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03010 RPB2, POLR2B; DNA-directed RNA polymerase II subunit RPB2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_02092375_02096188.mRNA True 1179 mRNA 0.47 8 2092293 2096188

Neighbor

gene id symbol gene type direction distance location
CI01000000_02080057_02086228 REST coding upstream 4783 2079831 ~ 2087510 (+)
CI01000000_02018856_02033091 EXOSC3 coding upstream 57914 2018597 ~ 2034379 (+)
CI01000000_01996254_01997531 GPR151 coding upstream 94676 1996074 ~ 1997617 (+)
CI01000000_01978179_01992602 PPP2R2BB, PPP2R2B, PPP2R2B.L coding upstream 99332 1978179 ~ 1992961 (+)
CI01000000_01916310_01925119 NA coding upstream 166903 1916052 ~ 1925390 (+)
CI01000000_02237986_02243555 NA coding downstream 141506 2237694 ~ 2243820 (+)
CI01000000_02334112_02352906 NA coding downstream 237367 2333555 ~ 2353369 (+)
CI01000000_02496792_02498535 NA coding downstream 400556 2496744 ~ 2498594 (+)
CI01000000_02516813_02517287 NA coding downstream 420625 2516813 ~ 2517787 (+)
CI01000000_02534790_02541012 NA coding downstream 438602 2534790 ~ 2541023 (+)
G721 NA non-coding upstream 51561 2040364 ~ 2040732 (+)
G719 NA non-coding upstream 53201 2038857 ~ 2039092 (+)
G718 NA non-coding upstream 53577 2038477 ~ 2038716 (+)
G717 NA non-coding upstream 54035 2038033 ~ 2038258 (+)
G710 NA non-coding upstream 68322 2023761 ~ 2023971 (+)
G1323 NA non-coding downstream 63498 2159686 ~ 2160082 (+)
G1324 NA non-coding downstream 68459 2164647 ~ 2165127 (+)
G1345 NA non-coding downstream 84250 2180438 ~ 2180896 (+)
G1346 NA non-coding downstream 84798 2180986 ~ 2181410 (+)
G1357 NA non-coding downstream 96294 2192482 ~ 2193168 (+)
G579 NA other upstream 183485 1767917 ~ 1908808 (+)
G435 NA other upstream 659439 1425121 ~ 1432854 (+)
G350 NA other upstream 1415356 671842 ~ 676937 (+)
G252 NA other upstream 1585221 503209 ~ 507072 (+)
G2774 NA other downstream 2357590 4453778 ~ 4454232 (+)
G2850 NA other downstream 2629798 4725986 ~ 4726482 (+)
G6811 NA other downstream 8108643 10204831 ~ 10321679 (+)
G6820 NA other downstream 8331035 10427223 ~ 10433018 (+)
G7018 NA other downstream 8882301 10978489 ~ 10980872 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017799 polr2b,LOC102791558,LOC107750329 coding CM030131.1 CM030131.1 23863882 ~ 23875075 (+)