Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000000_02080057_02086228 |
| gene name | REST |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 2079831 ~ 2087510 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| rest | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including negative regulation of neuron maturation; negative regulation of smoothened signaling pathway; and nervous system development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in ectoderm; endoderm; fin; head mesenchyme; and nervous system. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 27; gingival fibromatosis 5; and nephroblastoma. Orthologous to human REST (RE1 silencing transcription factor). |
| description |
|---|
| RE1-silencing transcription factor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000000_02080057_02086228.mRNA | True | 4778 | mRNA | 0.44 | 5 | 2079831 | 2087510 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000000_02018856_02033091 | EXOSC3 | coding | upstream | 45452 | 2018597 ~ 2034379 (+) |
| CI01000000_01996254_01997531 | GPR151 | coding | upstream | 82214 | 1996074 ~ 1997617 (+) |
| CI01000000_01978179_01992602 | PPP2R2BB, PPP2R2B, PPP2R2B.L | coding | upstream | 86870 | 1978179 ~ 1992961 (+) |
| CI01000000_01916310_01925119 | NA | coding | upstream | 154441 | 1916052 ~ 1925390 (+) |
| CI01000000_01899373_01901550 | TSTD2 | coding | upstream | 178149 | 1899373 ~ 1901682 (+) |
| CI01000000_02092375_02096188 | POLR2B.L, RPB2, POLR2B | coding | downstream | 4783 | 2092293 ~ 2096188 (+) |
| CI01000000_02237986_02243555 | NA | coding | downstream | 150184 | 2237694 ~ 2243820 (+) |
| CI01000000_02334112_02352906 | NA | coding | downstream | 246045 | 2333555 ~ 2353369 (+) |
| CI01000000_02496792_02498535 | NA | coding | downstream | 409234 | 2496744 ~ 2498594 (+) |
| CI01000000_02516813_02517287 | NA | coding | downstream | 429303 | 2516813 ~ 2517787 (+) |
| G721 | NA | non-coding | upstream | 39099 | 2040364 ~ 2040732 (+) |
| G719 | NA | non-coding | upstream | 40739 | 2038857 ~ 2039092 (+) |
| G718 | NA | non-coding | upstream | 41115 | 2038477 ~ 2038716 (+) |
| G717 | NA | non-coding | upstream | 41573 | 2038033 ~ 2038258 (+) |
| G710 | NA | non-coding | upstream | 55860 | 2023761 ~ 2023971 (+) |
| G1323 | NA | non-coding | downstream | 72176 | 2159686 ~ 2160082 (+) |
| G1324 | NA | non-coding | downstream | 77137 | 2164647 ~ 2165127 (+) |
| G1345 | NA | non-coding | downstream | 92928 | 2180438 ~ 2180896 (+) |
| G1346 | NA | non-coding | downstream | 93476 | 2180986 ~ 2181410 (+) |
| G1357 | NA | non-coding | downstream | 104972 | 2192482 ~ 2193168 (+) |
| G579 | NA | other | upstream | 171023 | 1767917 ~ 1908808 (+) |
| G435 | NA | other | upstream | 646977 | 1425121 ~ 1432854 (+) |
| G350 | NA | other | upstream | 1402894 | 671842 ~ 676937 (+) |
| G252 | NA | other | upstream | 1572759 | 503209 ~ 507072 (+) |
| G2774 | NA | other | downstream | 2366268 | 4453778 ~ 4454232 (+) |
| G2850 | NA | other | downstream | 2638476 | 4725986 ~ 4726482 (+) |
| G6811 | NA | other | downstream | 8117321 | 10204831 ~ 10321679 (+) |
| G6820 | NA | other | downstream | 8339713 | 10427223 ~ 10433018 (+) |
| G7018 | NA | other | downstream | 8890979 | 10978489 ~ 10980872 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_008188 | rest | coding | NC_007125.7 | CM002898.2 | 52418247 ~ 52433292 (-) |
