G2750


Basic Information

Item Value
gene id G2750
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12142906 ~ 12150716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3987
TCTTTTCTGGCTTCTGGAACTTGTATTTCTTGCTGGGATTGCCGCTCTCATGAAGAACTGTGATCCACTCTCGTAACCTGCTGACCACTTCAACCATCTCTGCATTACCACATTTCTCTTCTCTGCTGGATTTCCTGAAGGGCAGGGACACTGTCCTGGACACTTCACAGAAATCTGCTTCCCAGAGATGCAAGCTTGATATTCTAGTTTACCTTGGTGGAGTAAGTGTGTCCGTCTGTTCCACAAACAGGTGAAGGGTGCACAACTGGACATCTTTTGCATTTCAGCAGTGGAGAGTTCATATTCATGAAGTTTACCTCATTCTACGTTGACTAACACAGGTGGGTGTTTGGTAATCTTCAGCCACACACACTTTATGGCGGCCACATTTTATCTTGAGGCACGGATCTTTGGCAGGGTCCAGAGCTgaaacacatacaaaaataaacttgtGTGACCTATGTATACAAAACTGATACACACGAAGCAAATATTGAATATGTGAATGCTGTTAGATTTAGTTTACATTGTGGGAACTCAACAAGAATGAACTGTAGACACTGATAGCGTTGTTTTCTGCAGTCTGTCTTGCAGTAAGATCCTGTAAGTCTGTATTGTTTTAGCACCAGATTTACTGGAACTTAACTGGGTTTTGTGACTGAGGCAAAATCTATAATAGCTATCCGAGCCATCCTAGCTGTATACAACTTTCAAATATGCATCATTTAAACGGAGAAACCGGAACTAAAGATAAACAAGATAAACGCAGatatatgaaatgtaaacaaagcGGTGCTTGCTTACCATTTTGAATATCAGTAGAGCTGATAGCTTTCTTCATTTTAAGCGGCTCACATTGTTATGATAATATTCACCTATTGGAATGCATTGGTAAGATCTTGTAACATTAGAACAATGTTCTGTTTGTGCCGCCTTCATTTACTTTCACGTTTTCCTCACTGTCACTTGACACTGACTCATTCACCAAAGTAGGCATCCAATCAGAGTTCTTACTTTCCCGACGGTCCAGACTCCAATTCAACATGCAACACACCAAACAAACTAGCCTGACTAGCATCATCAGCTCGACGAGAGCCAACAGCAAACCAGCGGCTTGGTGTGTCCCGGCCCTCTGGAGGTGTATAGGTTTATAGTTTTATGACATATTTATATACGATTTatgaagctttaaaataatggccactatcaaCCAGCTTTACCAAGCTTAGAAGAGCCTGGATAAATTTGTAAAAGAAATTCTGACTGTGTTCGTTTAAAAGAAGAAAGGTATATACACCCAGAAATTATCGGggcgtttttaatttttgggcgaactatttctttaagatttTTTGAAGTGCCCAGCTTAGCCACCAAAGCGTGCTTTCTTTAAGTCATTATTTGTGTATTCTGGACTATAACCCTCATTATATTCATTATCGGTTACTCATTGTTGGTTCATTACTGTCAGCTGTTTATCATCGATTCATTAGCCTCACACTATCACCTTGTTCATTTTGTCTTTAGTTGCGTTCTGATCCTGTGTTGCTATCTTTGTTTGCTGTTTTCGCTCGGGTGGATTGTGTTTTTTGGACTCTGAAAATTAAACTGCAAATGGATCTTTTGTGGGAGCATTCCGTGACAAGAATGAACAAAACGGCATCGATCAGTTTCAGCTTTccgtttaaaaagaaaaaaaaaaaaatctgtatattattatagctctcaattattttttaagctacagaaagacaaacattttgctGGAAAACTGCACAATACCTGATCTTCCAGCCTGGGATGAagttatatacattaataatcatttgGGATAAATATTATGTAACTTAATGGAAAACTATGTGGCACAGTGCGATGGAAGGCCTGAGTCATAGCTAAACGCCGCAGACAGTCTCTGGATGTACGTACACTCCTAGAaaataatgtttgattttaaagacATGTCATGCCATGTCACACTGCTGCGCTTCTCGCCTACTGTCTGACCCTCTTGACAACTGGGTTAATTTGCCCCAAAATTATACATCAATTACTTCAATAATCTcatgttccaaacccataagaccttttttcatcttcagaatgcgaattttttaatgaaatcagaaAGATTTCTGTCCCTAAAGTCCTTTAACATCTACAACTGAcacttaaaatgttcataaatatgTCATAAAGGATTAAGTCTTTTGAAAATATcaatttctcaatttttttcacatataaACACTTATCAACACGTATAAAGCACATGAAATATGGTAAACAGAAATGCAAACATTCTCGCTTATGGCACAAAAACCAGTGAGTTTTGTTCTCGCGTGTGATCCAAACACATTTCATCTTTCACAAAAATGAAGAAGTTTTACTCTACTGTTTTAAGCAAGTATGGCTGGGCTTCTGTTTACCGTATTTGATGTGCTCTGCTACCATATTCTCACTGTGCACTGATTAGTGCTAAACCGATCACTTCATATGGATTACTTTTACAATGTCTTCATAAATTGTGTGATTATATGTATTACCGATTGTGTCTGCGTAAATAAGGattctatttttgtttcagCCTGAAATGGGGCAGTAGCTAATGCTGTGACGAAAAGTAAGCGAGAAGGAAGAATACAGAAGACAGAGAAGGAACGAATAACAGTCCTAATGTCATTAAGTGCTTTTATAG

Function

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process

KEGG:

id description
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU3987 True 2698 lncRNA 0.38 4 12142906 12150716

Neighbor

gene id symbol gene type direction distance location
ndst3 ndst3,LOC107551574,LOC107591550,LOC107702380,LOC107750457,LOC108439183,LOC108260488,LOC107656734 coding downstream 48012 11960370 ~ 12094894 (-)
mettl14 mettl14,LOC107591585,LOC107754186 coding downstream 216084 11923120 ~ 11926822 (-)
LOC122351032 LOC107754184,LOC107551556,LOC107656104 coding downstream 224699 11910750 ~ 11918207 (-)
grhprb grhprb,LOC107702374,LOC107656243,LOC107754183,LOC107591546,LOC108444366 coding downstream 292251 11847007 ~ 11850655 (-)
tma16 tma16,LOC107754160,LOC107551564,LOC107656272 coding downstream 324034 11816476 ~ 11818872 (-)
tll1 tll1,LOC107548346,LOC107745060,LOC107656041,LOC107591552,LOC107750422,LOC107702281 coding upstream 11121 12161837 ~ 12195683 (-)
cpe NA coding upstream 60720 12211436 ~ 12225082 (-)
klhl2 klhl2,LOC107745059,LOC107655955,LOC107702385,LOC107591556 coding upstream 85489 12236205 ~ 12246905 (-)
rapgef2a LOC107745058,LOC107548350,LOC107655945 coding upstream 97779 12248495 ~ 12281828 (-)
npy1r npy1r,LOC107591578,LOC107548312,LOC107656908,LOC107702283 coding upstream 141513 12292229 ~ 12308709 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding downstream 213910 11927551 ~ 11928996 (-)
G2690 NA non-coding downstream 232896 11849622 ~ 11910010 (-)
LOC122328967 NA non-coding downstream 346913 11793815 ~ 11795993 (-)
G2665 NA non-coding downstream 371399 11771236 ~ 11771507 (-)
G2664 NA non-coding downstream 371929 11770764 ~ 11770977 (-)
G2826 NA non-coding upstream 139113 12289829 ~ 12290106 (-)
G2829 NA non-coding upstream 184636 12335352 ~ 12336759 (-)
G2837 NA non-coding upstream 275497 12426213 ~ 12442443 (-)
LOC122348535 ncapd3,LOC107709432,LOC107702392,LOC107750432,LOC107655906,LOC107591581 non-coding upstream 276451 12427167 ~ 12443883 (-)
G2839 NA non-coding upstream 285201 12435917 ~ 12441497 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 25523 12097910 ~ 12117383 (-)
apela NA other downstream 354240 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 562189 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 630073 11510439 ~ 11512833 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other downstream 731193 11407565 ~ 11411713 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other upstream 187246 12337962 ~ 12366108 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 753483 12904199 ~ 12926482 (-)
smim18 NA other upstream 818377 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 1003770 13154486 ~ 13159444 (-)
G3072 NA other upstream 1140580 13291296 ~ 13291723 (-)

Expression


Co-expression Network