tma16 (tma16,LOC107754160,LOC107551564,LOC107656272)


Basic Information

Item Value
gene id tma16
gene name tma16,LOC107754160,LOC107551564,LOC107656272
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11816476 ~ 11818872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236331.1
CGACATGATATACGTACAAGCGGAACTTCTGACTAATGTCTGCGATACACGGAACAAAAATACCGCCGAACTGTGTCAGCGGTCCGTGCCTTAAGTCGTCCCCCCTCTAGTCACACGTGTGGCAGAGAGATATACACTTATATCAGCAAATATGCCGAAGGCAGCCAAGGGAAAGGGACAGGTGGAGAAGAAGGCCGTGCACCCATACAGCAGGAAAGCTGCGTATTTAGCAAGCGCTGCCATCAAACAACAGAGGAAAGAAAAATTAAAGGGTGAAAAGGCACAGCGTCTAAATCTGAATGGCGAAAAACTTTTGTGGTTCCAAAGCCAGCTAGACCCTGAAAAAGCAGAATACACTAAACACGATGCTTGTGAAATAATCGAGAGGTACCTTCACCGGTTTGACGGGGAGCTGGAGCAAATTGAGTTAGCAAACAGTATCAAAGGACGACAGGGTCGTCAGTATGGCTCTAGAGAGGCTGTCATCAAACAAACGATAGAACGAGAGAGAGCTCAGTATGACGGAATTGGCTTTGAAATCCCTGATATCATCAATTGTAAGCATCTGAAAATATTTAGAGATTGGACCGGTGACCTCAAGAAACTCCCCAACATTAAGATGAGAAAGGTTTCAGCCAAAGACTCTGACAGTGCACCGTCTGCAGTTTCACAAGATAAACACACGCAAGAGGAGAAAGAAGATGCATCTCTGAATTCTGACACAGACCTATAGCACCGTGAAATCCTGCAGCTCTACTACAGTAAAGTTTACTGTATAGGAAATGGACCATAGTGTATTGGGCTGCttgcaaaaatgtgttgttgtaAGGAGAGAAGTTACTTAGTCACTCAGGTAACACAGTATGGTTCATCCATAAATAAACAGACTTTGAAACCGTTTGAAACATTCA

Function

symbol description
tma16 Predicted to be active in nucleus. Orthologous to human TMA16 (translation machinery associated 16 homolog).

NR:

description
PREDICTED: translation machinery-associated protein 16

GO: NA

KEGG:

id description
K14860 TMA16; translation machinery-associated protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236331.1 True 911 mRNA 0.44 7 11816476 11818872

Neighbor

gene id symbol gene type direction distance location
polr1e polr1e,LOC107754182,LOC107754175 coding downstream 87212 11725127 ~ 11729264 (-)
ecpas kiaa0368,LOC107702367,LOC107551559,LOC107656759 coding downstream 105673 11693517 ~ 11710803 (-)
kitb kitb,LOC107754153,LOC107656054,LOC107746005,LOC107702363,LOC107591536 coding downstream 149742 11654904 ~ 11666734 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107746009,LOC107702362,LOC107591534 coding downstream 174268 11636160 ~ 11642208 (-)
rbm47 rbm47,LOC107656158,LOC107754149,LOC107702361,LOC107746010 coding downstream 184833 11608561 ~ 11631643 (-)
grhprb grhprb,LOC107702374,LOC107656243,LOC107754183,LOC107591546,LOC108444366 coding upstream 28135 11847007 ~ 11850655 (-)
LOC122351032 LOC107754184,LOC107551556,LOC107656104 coding upstream 91878 11910750 ~ 11918207 (-)
mettl14 mettl14,LOC107591585,LOC107754186 coding upstream 104248 11923120 ~ 11926822 (-)
ndst3 ndst3,LOC107551574,LOC107591550,LOC107702380,LOC107750457,LOC108439183,LOC108260488,LOC107656734 coding upstream 141498 11960370 ~ 12094894 (-)
tll1 tll1,LOC107548346,LOC107745060,LOC107656041,LOC107591552,LOC107750422,LOC107702281 coding upstream 342965 12161837 ~ 12195683 (-)
LOC122328967 NA non-coding downstream 20483 11793815 ~ 11795993 (-)
G2665 NA non-coding downstream 44969 11771236 ~ 11771507 (-)
G2664 NA non-coding downstream 45499 11770764 ~ 11770977 (-)
G2663 NA non-coding downstream 45892 11769442 ~ 11770584 (-)
G2644 NA non-coding downstream 49818 11766398 ~ 11766658 (-)
G2690 NA non-coding upstream 30750 11849622 ~ 11910010 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding upstream 108679 11927551 ~ 11928996 (-)
G2750 NA non-coding upstream 324034 12142906 ~ 12150716 (-)
G2826 NA non-coding upstream 470957 12289829 ~ 12290106 (-)
G2829 NA non-coding upstream 516480 12335352 ~ 12336759 (-)
apela NA other downstream 27810 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 235759 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 303643 11510439 ~ 11512833 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other downstream 404763 11407565 ~ 11411713 (-)
LOC122343263 NA other downstream 419900 11395734 ~ 11396576 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other upstream 279038 12097910 ~ 12117383 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other upstream 519090 12337962 ~ 12366108 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 1085327 12904199 ~ 12926482 (-)
smim18 NA other upstream 1150221 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 1335614 13154486 ~ 13159444 (-)

Expression


Co-expression Network