LOC122328967


Basic Information

Item Value
gene id LOC122328967
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11793815 ~ 11795993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3892
GTGGCAGTCTTGCTTTGTGGTTTgtcctctttatttttttcataaaaagacGAAGAAGGTATCAAAGGAAGACTTGAGGAGCCACTCATCATCTGAGTCCGTCTGCGGGACTCTCCATACTCATGAATGATTTCATGTGACATGGACCAGGATCGGTCATGACCTGACCTGCATGCTGCTGCCTTTATTGCACTTGAAACCTCCTCACCTGGACTGGATCCAGCTGCAAAGTCAGaggtggaattctgtgtgtttgttatggATCTGTTGTTTTCAGGTTTTGAGCTGGTCTTCATCATCATTGCTTTCACTATTATGTGCTTATTCGGCCTGGCTgctgtttacacacacaataCAGATCATCAAgATAACTACGTTCAGACGGAGCAGAAGATAATGCAACAAAAGAGTAACTCGAAGAAGAAACAGCGAGTTTTCACCAAAACCAGTCAAGAGCTACCGTGAACACGCAAAcaattacatttcatataaatacagAGTCGTTCTGTTGGTGCTGGAATTAAAAGGCCTGGCTCACCAAATGCAGCTATCGAGTGCGTGAACATCTCTCACGCTGAAAATGGACTTGCTGTTAAGCTCATCTTTTAGTTGACCCTCAAGGCCAGCTGTCTCTGATTGGCTTGGATGCATGCCAGTTTATGCTTGGGTGGGCAAACTGCTTCTAAAGTCTCCGGGTGGGGGTGGCCTTTGGCAATGAAATTGCTGAATGTTtacagtgaaaatattttttacctacaaatacaatttatttatatcataatgttgcaatatttacataatgcatttttagaatgtattttatttatttttttacataaatatgaatatcgtccagtttacataaatatatatgaatacatttgaaCAAGAATAGAAAATGGTGGCTTTAtcttaataatgttaatatttttttcttctataaacgtatgtattaatttaataaagctgcatatacatttactgtatatgtaaacacaaagattttggggggttttattatgttattatgtttttattgtgtaataattattgggtttttttacctaatcaaaataacccaatgcagtttaattgaaattcacaataaaagt
>XR_006247872.1
GCAAGTGTATGTCTCTAGGAAACCTTAAGTCTGAAAAGTGGGTTTGAACGTTGACGTGGTTTATAGCCGGCAGTAAGGAAGTAGGAAGAAGTAGACTATGATTGCTCTGTGTGAGAAGCTTGTAAAACCTAAAAGTCTAACATACAAGCATGTTTCACACACTGTGTATGGTATAAACTGGATGAGCAACTATCGATGGGTTGAAACctgctgaaagaaaacaaaacaagaggtggaattctgtgtgtttgttatggATCTGTTGTTTTCAGGTTTTGAGCTGGTCTTCATCATCATTGCTTTCACTATTATGTGCTTATTCGGCCTGGCTgctgtttacacacacaataCAGATCATCAAgATAACTACGTTCAGACGGAGCAGAAGATAATGCAACAAAAGAGTAACTCGAAGAAGAAACAGCGAGTTTTCACCAAAACCAGTCAAGAGCTACCGTGAACACGCAAAcaattacatttcatataaatacagAGTCGTTCTGTTGGTGCTGGAATTAAAAGGCCTGGCTCACCAAATGCAGCTATCGAGTGCGTGAACATCTCTCACGCTGAAAATGGACTTGCTGTTAAGCTCATCTTTTAGTTGACCCTCAAGGCCAGCTGTCTCTGATTGGCTTGGATGCATGCCAGTTTATGCTTGGGTGGGCAAACTGCTTCTAAAGTCTCCGGGTGGGGGTGGCCTTTGGCAATGAAATTGCTGAATGTTtacagtgaaaatattttttacctacaaatacaatttatttatatcataatgttgcaatatttacataatgcatttttagaatgtattttatttatttttttacataaatatgaatatcgtccagtttacataaatatatatgaatacatttgaaCAAGAATAGAAAATGGTGGCTTTAtcttaataatgttaatatttttttcttctataaacgtatgtattaatttaataaagctgcatatacatttactgtatatgtaaacacaaagattttggggggt
>XR_006247878.1
TTGCTTTGTGGTTTgtcctctttatttttttcataaaaagacGAAGAAGGTATCAAAGGAAGACTTGAGGAGCCACTCATCATCTGAGTCCGTCTGCGGGACTCTCCATACTCATGAATGATTTCATGTGACATGGACCAGGATCGGTCATGACCTGACCTGCATGCTGCTGCCTTTATTGCACTTGAAACCTCCTCACCTGGACTGGATCCAGCTGCAAAGTCAGaggtggaattctgtgtgtttgttatggATCTGTTGTTTTCAGGTTTTGAGCTGGTCTTCATCATCATTGCTTTCACTATTATGTGCTTATTCGGCCTGGCTgctgtttacacacacaataCAGATCATCAAgATAACTACGTTCAGACGGAGCAGAAGATAATGCAACAAAAGAGTAACTCGAAGAAGAAACAGCGAGTTTTCACCAAAACCAGTCAAGAGCTACCGTGAACACGCAAAcaattacatttcatataaatacagAGTCGTTCTGTTGGTGCTGGAATTAAAAGGCCTGGCTCACCAAATGCAGCTATCGAGTGCGTGAACATCTCTCACGCTGAAAATGGACTTGCTGTTAAGCTCATCTTTTAGTTGACCCTCAAGGCCAGCTGTCTCTGATTGGCTTGGATGCATGCCAGTTTATGCTTGGGTGGGCAAACTGCTTCTAAAGTCTCCGGGTGGGGGTGGCCTTTGGCAATGAAATTGCTGAATGTTtacagtgaaaatattttttacctacaaatacaatttatttatatcataatgttgcaatatttacataatgcatttttagaatgtattttatttatttttttacataaatatgaatatcgtccagtttacataaatatatatgaatacatttgaaCAAGAATAGAAAATGGTGGCTTTAtcttaataatgttaatatttttttcttctataaacgtatgtattaatttaataaagctgcatatacatttactgtatatgtaaacacaaagattttggggggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3892 True 1112 lncRNA 0.42 3 11793815 11795993
XR_006247872.1 False 1008 lncRNA 0.37 3 11793914 11795742
XR_006247878.1 False 1004 lncRNA 0.38 3 11793914 11795984

Neighbor

gene id symbol gene type direction distance location
polr1e polr1e,LOC107754182,LOC107754175 coding downstream 64551 11725127 ~ 11729264 (-)
ecpas kiaa0368,LOC107702367,LOC107551559,LOC107656759 coding downstream 83012 11693517 ~ 11710803 (-)
kitb kitb,LOC107754153,LOC107656054,LOC107746005,LOC107702363,LOC107591536 coding downstream 127081 11654904 ~ 11666734 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107746009,LOC107702362,LOC107591534 coding downstream 151607 11636160 ~ 11642208 (-)
rbm47 rbm47,LOC107656158,LOC107754149,LOC107702361,LOC107746010 coding downstream 162172 11608561 ~ 11631643 (-)
tma16 tma16,LOC107754160,LOC107551564,LOC107656272 coding upstream 20483 11816476 ~ 11818872 (-)
grhprb grhprb,LOC107702374,LOC107656243,LOC107754183,LOC107591546,LOC108444366 coding upstream 51014 11847007 ~ 11850655 (-)
LOC122351032 LOC107754184,LOC107551556,LOC107656104 coding upstream 114757 11910750 ~ 11918207 (-)
mettl14 mettl14,LOC107591585,LOC107754186 coding upstream 127127 11923120 ~ 11926822 (-)
ndst3 ndst3,LOC107551574,LOC107591550,LOC107702380,LOC107750457,LOC108439183,LOC108260488,LOC107656734 coding upstream 164377 11960370 ~ 12094894 (-)
G2665 NA non-coding downstream 22308 11771236 ~ 11771507 (-)
G2664 NA non-coding downstream 22838 11770764 ~ 11770977 (-)
G2663 NA non-coding downstream 23231 11769442 ~ 11770584 (-)
G2644 NA non-coding downstream 27157 11766398 ~ 11766658 (-)
LOC122345585 NA non-coding downstream 41184 11748538 ~ 11752631 (-)
G2690 NA non-coding upstream 53629 11849622 ~ 11910010 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding upstream 131558 11927551 ~ 11928996 (-)
G2750 NA non-coding upstream 346913 12142906 ~ 12150716 (-)
G2826 NA non-coding upstream 493836 12289829 ~ 12290106 (-)
G2829 NA non-coding upstream 539359 12335352 ~ 12336759 (-)
apela NA other downstream 5149 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 213098 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 280982 11510439 ~ 11512833 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other downstream 382102 11407565 ~ 11411713 (-)
LOC122343263 NA other downstream 397239 11395734 ~ 11396576 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other upstream 301917 12097910 ~ 12117383 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other upstream 541969 12337962 ~ 12366108 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 1108206 12904199 ~ 12926482 (-)
smim18 NA other upstream 1173100 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 1358493 13154486 ~ 13159444 (-)

Expression


Co-expression Network