LOC122352533 (LOC107747056,LOC107693900,LOC107548843,LOC107548828)


Basic Information

Item Value
gene id LOC122352533
gene name LOC107747056,LOC107693900,LOC107548843,LOC107548828
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11151111 ~ 11158734 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249972.1
GCAAAACAGTGAGGCAGAAGCCACGCACAGCGCTTTCCTTGGAAAGAAAGATGtgtttctttctGATCTGTTGTGGGTGGATGCTGGTGTCTTCAGTTTTTGcatTTGGCAACGCGGCGGTGAATTACACTACGACTTTATTTGTCAATCTTGGAGAGTCTGCCAAAATTAGATGCAACTACAACCGAACAAATGACACGGAAAGCATGACAGCAGTTCTGCAAACGTTAAATCACACACTGTGTTCATATTTCTTACTTGAGAATACATGGAAGAAACTACATTGTGAAGATCACAGCAGGTTCATATGGATTCCAGAAACTAAGGAAATAACATTTGAGCTCTTAAATCTTCAAATTAAGGATATCGGCACATACACCTGTACTGTGAAGAGGATTGTAAAACCACCTCAAGTGGATCTGGGAGTGCAAAAAATTCAAGTTATtgTGCGTCCCACCTTGTCTCTGTCCTGTGTGAAGAGGCCTGATGGGTCTCCCATGATTCTGTGCTCTGTGCATTTTTACCCCGATTCTCTTGAACAGTTGTGGATCAGAGACGGAGAAGTCCTCAAcagctcacacacaaacaaatcattcaATGGATCCTTTGGTCAGAAATCGTACCTCATACTGCCACCACGAAACATCAATGATATAATCTACTCCTGCTGGGTAAACCACTCATTCTTGAACAAACCACTTATGGCCAATTTATCAAGCTCTGTCTGTTACGAAAGTGGGGGTGTAACTCTGACTGTGACAGTAGTGTCAGTCATGTTGACGGTGCTGTTGACTGTCTTTTTGATCGTTCCAGTCATACTTATACATAACAAAAGGGCATGTCATCAGTCTGTGTCTCCCATAGGAGTGAGTTCCACACCTGAGCCTGTCCTCCATGATCACCTGCAGTCTGAGATGCTGTACTCAACACTGGCTACCTCAAAACAGCGTCACTTCTTCATTTGCATCAAGATAGATCATCAGGTCTCTGCAAGAGACATAAGAGGATGCAGTTTCCGAAATATGAAATGGTGAGAATTTTCACGTCACATAagatcaataataataacatatatctacaaaaatatttgataaatagcTTAAATCCGCTTTTGTTTTCGGACATAATCAGATACACctgttttatgctgttttatgttcaatgcttgattctgattggtcagtgaatcgttaaatatatttagtatgcTTAAAATGTCCGCTAAAGTTTGTAACTGAGAGTTCGCCTTGGCGAGCAGTTTCATGCTTGTGCTAGTAATGTTTTTCATATCCTCTGATTTCTTTTGTTTAACATAGCCATTTCAGttcaaatcaacatttaatgtacttttaacTAAGCACCCGTGCAGTAAGTTAGATTATATACAGCTGGTCGTTATCACAAAACAAACCACAACAAAGTATctataatacaaaatgtatcactttctttttcattgatttatctGGCTTTCTCAATAGATATCATCAAAGTGTGCGTGGATGCTGCTCTCTTTGATTCCTGcatttatagcTGGACATGCATTATGTAACGACAACTCAGTTCAGACTGCACATCGAGGAATGTCAGTCAATATCAGCTGTAACTACAAACCAACAAATGAAACCAATGGTTTCATAGTGGAACTGAAAACTAATAGGACATTGTGCTCAGTAATGAAAAGTAATAACTCATGGATAAAATACTGCTGTATGAATCACAGTAAATTTATTTGGATTCCAGAAACTGTGCAAATGGTATTTGAGATATCAAATCTGCAGATAAATGACATTGGCACTTACACATGTGTTGTGACAAGATCTATACCACCTCCTTCTGTGCCTTTGAGAGAAGACAGAACATTTGTTCAAGTGATTGGTAAGAttattttgaaacagaaattaCAATGACAAGTGATTTGAGTGCGTGTATGGTATAACAATGTGCAGTGGCGTAACTTCAAGACGGCCCCCTCTGTGCTGCACCACGGTTATAAAacgcatacaaacacacagagctcGTGTCTAGAGAGAGAACCCAAATAAGCAACTTACCTACTAGCCTAACCTGCTTAATTTCGAACGAATAAAACCAGTATCTTATCAGTTACTTATATTAAACTGAACCATTATCTTTGCGTGCTTCTCTGTctaacacacgcgcacacattCTCAGACGATCGAGCGCTTTATTCTGgtaaaagcacaaaagaaaatgcGCGCAAACGCGTCCTTGCTCTTGAAGTACAACCACTTtaataaacactgcaaaaaaaactttacgAGGGTGGATTAGAACCCGCCGCCTCAGAAATGCTCGACGAATGTTGTACTACTAGACCACTAAAGAGCACAGTTAGCaaaattgtgaattaaaataaattatttctatatctgtatatataacaatatagcAACTTTGTCCCCAGAGGTCGGCTTGCAATGTGGGCCCCCACAGCAGGGCCCCAGCATCTGTAGTTACGCCATTtgataaataaagatattatattataactaaCTTACATTTCTTATAGCACAACCCGTTGTGTCTGTGTCGCATGTAAGAGCATTGGGTGGATTTCCCACGATGCTGTGCAGCTCTGAGGGGTTTTACCCTTCAGCTCTAGAGCAGCTGTGGATGAGAAAAGGAGAATTTCATAACGCCTCTCTCACAAACGGCATTAACAAAACCAACCCAGATGGATCATTCACCTTCCATTCATACCTGAATATAACTGACTGTGTGGACTACTCGTGTTGGGTAAACCACTCATCCTTGAGCCAACCGACAATACTCCACATATCTCCTGATTGTTACAAGAACAGAGATATGAATGTATGGAGAGCTCTGGTGACATCTGTTCTGCTAATTCTCACCATACTGATTATTACGGCTGTGTATGAGCATTTCAGAAGAGCACATAACAGGTCTGCTGAAAGCGTGGATGTCACACCTGTGCCTGAAATCCAGTCTGACAGGCAGTATGACATATATTCATTGTTGGGTGATCATCGTCCAGTCCCATGCAGCCCTGACGGAGTTCGCTTATCTCCATAATAAGAACACCAAGGCCCGGTTTCATAGCCAGggtttaaaggaacactcctaCTTTTTCTGGAAATAGGAGGTTTTCatggtaaaactcaatttattaactctgggggagttggagaattactttatttccaaaaaaaagtggagtgttcctttaaccaggattaggccatagttcaattaggacattgaagtaatttttataaacatgccctAGAAAAAAATCTTGGGGACATCAGTATCTATCAATACAAAAGTATCTAtcaatacaaaaatgttttgtattgatAGATATCCAGAGCCATTTCTATCTTAATAACATGATAGCAATTGTgtatcaatcatttcaatcaatcgtttttatttatatggcgcttttaacaacacaggttgcatcaaagcactgaacagtataaagcagaagaatacaatgacaatgatgtatgtaatatataatttatacatgaTTATTTAATCTTCCATTAACATTGTTGGCTGTATGTTGCCTATATGTTGACAGAATAGGCTTATTATGACACATGCAGTTTATAAGATGTTCTTTGCAAGCTTCAGCGTgtaaaaatcaatataatgGCTTGCAGATTGTAGATTTCTTTCCATTGTTGGcaattgttaaaaaatgaattcCTTATTTGTCACATGGTGTAGCCTACAGTCTTTGAATGTTTTCTCACGACCTACATCAAGCATGTAAGTTGGATACTGTGAGGTTAAAATAACCTGACCATTTAGTCACTTTCTCGGTTCAGCTGTTCAGTCAGAGCATGAAGAAATACGAATTCACGAATGTCACACAGCTGCTCTGAATAGAACTAACTAATAGAACTCTAAAATGCTTCTACTGCTGTCGGCAGCCTTTGAGCGCCAGTGTCACATCTGActctgaaatgaaaactgtggtTCTGTATTCAATGCTGAGTGATCATCATCAGTGTCATCTCCAATAATTATTCAAGTATATTATTCCAATGAGACGTGCAGAcctcaaaaaataaagtatgtctaagttttcacacttttttctgATATTGTGTGAGGTGAAATGACTTAATTTAGCCCGTCTAAAAACCTTTACTTTCTTTTGTCTATATTCCAAGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107747056 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249972.1 True 4174 mRNA 0.39 10 11151111 11158734

Neighbor

gene id symbol gene type direction distance location
btg3 btg3,LOC107699262,LOC107744619,LOC107747057,LOC107693957,LOC107548882,LOC107578493 coding downstream 1279 11145385 ~ 11149832 (-)
LOC122352515 ddx56,LOC107733287,LOC107751685 coding downstream 12420 11081639 ~ 11138691 (-)
cltca cltca,cltc,LOC107548879,LOC107744621 coding downstream 71693 11046407 ~ 11079418 (-)
med13a med13,LOC107693951,LOC107744626,LOC107699258,LOC107747042,LOC107548827 coding downstream 205396 10892793 ~ 10945715 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027,LOC107693886 coding downstream 259347 10873812 ~ 10891764 (-)
LOC122352716 LOC107576779 coding upstream 9391 11168125 ~ 11172314 (-)
alcama alcama,LOC107548884,LOC107693963,LOC107576815,LOC107699268 coding upstream 132164 11290898 ~ 11350637 (-)
si:ch211-103f14.3 LOC107693965,LOC107747051,LOC107548846,LOC107699269,LOC107744635,LOC107576832 coding upstream 293889 11452623 ~ 11457502 (-)
zpld1a LOC107548885,LOC107693966,LOC107747018,LOC107744615,LOC107576843,LOC107699252 coding upstream 300099 11458833 ~ 11466838 (-)
tmem126a LOC107747013,LOC107744609,LOC107693976,LOC107691630 coding upstream 372103 11530837 ~ 11533005 (-)
G76642 NA non-coding downstream 40276 11096963 ~ 11110835 (-)
G76627 NA non-coding downstream 60050 11087586 ~ 11091061 (-)
LOC122352521 NA non-coding downstream 106258 11026069 ~ 11044853 (-)
LOC122352520 NA non-coding downstream 112311 11035692 ~ 11038800 (-)
G76632 NA non-coding downstream 156685 10994218 ~ 10994426 (-)
G76657 NA non-coding upstream 59435 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding upstream 75638 11234372 ~ 11235690 (-)
G76693 NA non-coding upstream 327172 11485906 ~ 11486428 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding upstream 543137 11701871 ~ 11766210 (-)
LOC122353234 NA non-coding upstream 1289808 12448542 ~ 12453651 (-)
G76625 NA other downstream 112380 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 167373 10972881 ~ 10983738 (-)
G76498 NA other downstream 670922 10478059 ~ 10480189 (-)
G76438 NA other downstream 767802 10380096 ~ 10383309 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other downstream 867446 10267354 ~ 10283665 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other upstream 17835 11176569 ~ 11207252 (-)
ccdc83 NA other upstream 346576 11505310 ~ 11584960 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 1520256 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1623619 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 2333539 13492273 ~ 13533064 (-)

Expression


Co-expression Network