mrpl28 (mrpl28,LOC107659942,LOC107701427,LOC107554268)


Basic Information

Item Value
gene id mrpl28
gene name mrpl28,LOC107659942,LOC107701427,LOC107554268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10200476 ~ 10203182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258148.1
CGCGCTCGCGCTGGTGTCTCTCACAGGAAATGACGTGATGCCCTTGGTTAGCGTTACAGCGCGTGCTGACCGAGAGGCTAACGCTAGCAGGCTCACGCTTATCatgtaaagttaaattaaacattcCCTGTTCGCCTCATTTCCCGGTTTTGTCCAATAAAATGCCTCTACATAAGTACCCACCCAAAATCTGGGAAACCCTGAAGCTGCAGACGGGCGTCTACGCCCGTTTACCCCAGCACTACCTGCGCTCTCTGCAGGACGCCACCCCTCCTTCACCTGTGCACTGGACACCTCTGGGTGTCAAATACAAGCTGCTTTCCAAATCTGGACACAGAGAGCGAGTGCAGGACGTGCCTATCCCCGTCTATCACCCACCCGAATCACAGAGCGGACTCTGGGGCGGAGAAGGCTGGATATCTGGCTATAGATACGCAAACGATGACAAGCTTTCTGCAAGAGTGCACAAAACCTGGAAGCCGCAGCTGTTTAAGAGAGAGCTGTACAGTGAGATCCTCGACCAGACGTTCACTGTAACCATCACCGCTCGTACGCTCGACCTTATTGATGCCGCTGTCGGCTTCGACTTCTACATTCTCAAGACTCCGAAGCAAGATTTGAACTCCAAGTTTGGAATGGATCTAAAACGTGCGATGCTTTTACGTCTGGCACGGAAAGACAAAGATCTGTACCCCGATGATCCGTCTCGCAGGGACAAAATCTACAAGCGCTACAAGCAGTTTGAGATCCCAGAAGAAGAGGCTGAATGGGTGGGCTTGAGTCTAGAGGAAGCAGTAGAGAAACAGAGGCTGCTGGAAAAGAAGGATCCAGAGCCTCTTCATAAGAGTCTGGTGAAGAAGCTTGTGGAGGAGCTCACCATTAAGAAGCTCTCAGAGCCTCagattataaagaaaaaatgatgaCTCTTCTCTGCTTTGCCGTCATACAGTCCGAAGAATGAAccgtattgtatttattttgtgttaacaTCACCAACAGCTTGCTGAtattctgtaaatatatcattttttacttaataaacagGAGGAGAAATGTA

Function

symbol description
mrpl28 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28).

NR:

description
PREDICTED: 39S ribosomal protein L28, mitochondrial

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02902 RP-L28, MRPL28, rpmB; large subunit ribosomal protein L28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258148.1 True 1057 mRNA 0.49 6 10200476 10203182

Neighbor

gene id symbol gene type direction distance location
mos mos,LOC107554270 coding downstream 10378 10188723 ~ 10190098 (-)
lgals17 plin2,LOC107701431,LOC107727929,LOC107701433,LOC107582591,LOC107554272 coding downstream 23450 10164709 ~ 10177026 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding downstream 40988 10117804 ~ 10159488 (-)
tmem120ab zgc:103681,LOC107582661,LOC107672420,LOC107716217 coding downstream 114808 10081909 ~ 10085668 (-)
tyw1 tyw1,LOC107672403,LOC107727925,LOC107582638,LOC107554250,LOC108443711 coding downstream 118748 10034152 ~ 10081728 (-)
trnastop-uca NA coding upstream 145 10203327 ~ 10203413 (-)
cul5a cul5,cul5a,LOC107714978,LOC107582587,LOC107554266,LOC107701426,LOC107659927 coding upstream 1523 10204705 ~ 10214604 (-)
itgae.2 LOC107701425,LOC107582635 coding upstream 12681 10215863 ~ 10227750 (-)
LOC122358604 NA coding upstream 49410 10252592 ~ 10254569 (-)
LOC122358606 pim3 coding upstream 56053 10259235 ~ 10261167 (-)
G105339 NA non-coding downstream 24877 10173478 ~ 10175599 (-)
G105329 NA non-coding downstream 87456 10112785 ~ 10113020 (-)
G105321 NA non-coding downstream 106486 10086832 ~ 10093990 (-)
LOC122359357 NA non-coding downstream 409301 9780732 ~ 9791175 (-)
G105279 NA non-coding downstream 449987 9749836 ~ 9750489 (-)
G105361 NA non-coding upstream 40766 10243948 ~ 10249609 (-)
G105362 NA non-coding upstream 42282 10245464 ~ 10251995 (-)
G105363 NA non-coding upstream 46626 10249808 ~ 10250125 (-)
LOC122358386 NA non-coding upstream 66022 10269204 ~ 10269968 (-)
LOC122358536 NA non-coding upstream 80840 10284022 ~ 10284472 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 403553 9763871 ~ 9796923 (-)
G105059 NA other downstream 644689 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 763679 9434426 ~ 9436797 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 1154361 9038896 ~ 9046115 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other downstream 1537612 8657688 ~ 8662864 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 309449 10512631 ~ 10514062 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other upstream 455752 10658934 ~ 10663588 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 870099 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 1099048 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 1123330 11326512 ~ 11342116 (-)

Expression


Co-expression Network