itgae.2 (LOC107701425,LOC107582635)


Basic Information

Item Value
gene id itgae.2
gene name LOC107701425,LOC107582635
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10215863 ~ 10227750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259788.1
TTTGAAGTGGGCGGGTTTAAATGTCAGCAGCAACTGTGCTGTTCTACTTTCCTGAAGACCACAGCGAGCTGCTTTCTGTCTCGTCGTGCCAATATGTTTTTCTAAAGCGTGGAGTTTATCAAATTCACAAAATGTACAGAGGACTGCTATTTATGACCGTCATATGGAGTGCGACGGGGTTCAACGTTCAAATAACCCCAGTGAAGCATTTCAAAAATGATGATCCACTCTTTGGTCAAACCATTATTCAATCAACAGATGGATTTTTCGTTCCTTCCCCAAATACTGGAGCGCTTTTCAGATGCACTTTAAAAGATGAATGCGTTAAAGTAAATTCTAATGatgaaaaacgTAAAGGCCTGAGACCAGTAGCATCAGTATCTAGCCTGACATTAGAAGAGGAACAACTAGTCATGATGTGTAATCAAATTCGTGCAAAAATCAATAAGGCAGAGGATTTGAACGGAGATTGCAAACTGATGAATCCCTCGGGAGGAGTCCTTGGAAATCCGAATCCCGTTGCATTGGtcaacagcaacaacaacaacaatcattATCAAGGTGCAAGGCCTGACCAAGATCAATGGAGGATGAAAAGAGACGCCCAGCCATACAGGGACACAAAAGATAAGGATTATAACGTTAATGTGCCGCTGCCATCAGGCTCTGCACTTCTGGATCCTGCTACAAAgcaaatggaaaatgaaaaactcaacagaaacaacaacaacaatcattATCGAGGTGGAAGGATTGAGAAAGTTAAACGGAGGATGAGAAGAGACGCCCAGCTGGATAGTGGCAcagatgaagatgaggatgatgatgATCCTGGGACAGAGATTGCTTTTGTGCTGGACGGCTCTGGCAGCATTAAATATGACGACTTTCAGAGAGCCAAAGACTTCATGTACAATGTCATGTTCAATGTTTGGAACACATGTTTCGATTGTAACTTTGCGATAGTGCAGTATGGCAGCAAGATCAGGACAGAGCTCTCGCTGCTAGACAATGAAAACGGGACCAGATCCTTGCAAAAGGTCAAAGCAATACAGCAACTTTACAATCTCACGAAGACCTCCTCGGCCATCCATCATGTCCTCACAGATACTTTCATCCCTGAGAACGGATCAAAGGTTAACGCCAAAAAAATCATCATTGTATTGTCTGACGGAGAAATTTTAGGAGACACTATGAATCTTACTGATGTGTTGAACATGCCACAAATGAAAGGTGTCACTCGCTATTCCATAGGAGTTGGGGATGGCATTCTTACAAAACCTGAAGCAATACAACAGATGATAGACATAGCAGACCGTGGCAAATTTTACAACGTTTCTAATTATGCTGCATTAAATGACATCCTGTCATCACTGCAACAAAGTTTAATTGGAATTGAAGGCACTCAGCAAGGTGCAGGATTTCAGTTCCAGCTTGCTGAAGCTGGTTTCAGCTCCCATCTCATAGAGAAAAGTTCCTATCTTTTCGGGGCGGTCGGAGCCTATGACTGGAGCGGTGGAGTCTTCTTACAGTCTGGTAACGCTGTGCAATTCTTGAATCACTCTAATGGACCCAAATTTTCCTATTTAGGTTACAGTGTCACATCTGCTAAAGTACAACCCAGTAAAACACTCTACATATCTGGTGCACCACGGTACAACTTGACTGGTGGCGTATTTATTTTTGACGGCTCTGGAAAGTATGTGCTCCAGGGAGATCAGGTCGGATCTTACTTTGGATCAGTTCTTTGTGCCGTGGACATCGATAGAGATGAATACACAGATTATCTATTCGTTGGAGCACCGCATTTTCATCTAAACGGAGAAGAAGGCAAAGTGCTAGTGTACAAACTGAATCAGGGTAAGTTTGAGAGCGCATCCATGGAGCTGAAAGGCGATGAAGGACAGATCTTCGCCAGGTTTGGTGCAGCCATCGCTTCTATAGGAGACATCGATGGGAACGCGTTAAATGACGTAGCAGTTGGCGCTCCTCTAGAAACAGATTCCTCTggaagcatttacatttacaatggaTTAAAAGATGGATTTCGCTTTTCACAGAAAATATCTCCCTCAGATTTTGGAAGTAAACTTGTGCACTTCGGCCTGTCAGTAAGCGCTGTACCAGCTTCAAAAAAAGCCTCCATCGCTGTTGGAAGTCAAGGAGGAGTGTTTGTTTTCGAGACTATCCCTGTTGTTACCATTCAATTACGTACATCGATTCAATCAGTCATTCCTCTCCATCACCAGATGGTTGAAATATCCAGCAAAGTTGATATAACGTACCAAATATGCTTTCATGTGATAAATGGAAAGCTTGAAAtTGATCTTCCTATTAAGTACCAAATTGCCTTGGACACTGGAGTAAACAAAAAGCGCCTCACTGTTGACGGCAGAGATCTCTTAGAAAAAAAGTTCACCTTGAAACCAGATGAAGAGTGTGTACCTGTTATCAACCTTAAATATTTGGgctgttttgattgtttttcacCTATTAAAATCAAGTTAAATTTTTCACTGGATAACCCTCAAAATGATGCCCCTAAACGGATCCTTAATGCATTTACTCCAACAGAGGCTGTAAATgagatttcttttgAAAAGGATTGCAAGACTGCAGACTGTAAACCACACATCACATTATCTGATTCAAAAATTAGTGAAACCTTGATCATAATCGGAGAAACTCAAAGCTTGAGCGTCAATTTCAATCTTAAAAACTATGAAGACTCTTCCTATATGACCAGCCTGACTCTGACCTTCCCCAGCATACTGAGTCAGAAGaaaataaaaggcACCACCTGTCCTGTGCAGAACGACAATCAGATACAGTGTAATCTCCATCACCCTGTTTTCAGAAGAGGAGTAGAGACCAACCTTTTCATTTCATGGCAGCTCAATGACACgaaaacagatttgaagaatGCTGAGATTACTGCTAATCTAACCAGTCAGAATAATGGCTCTGAGATACTGGACTTTAAAATATATCCGTTTGCTGTGAAGTATTCCCTGCCAATCCAGCTAACCAGCAAAGCCAACCCGAGCAGACTCAGTATTGAAGAGGGGGAAAATGTAAAGACTCAGAGTTTGAATTTTTCATTTCGgTTTGCAGGTGAAAATAAGTACGGCGCTACAATCAGTGTAGTTGTAACCATTAAAAAGGAAACTTTCAAAACTGATTTGGACATCGTTAGAGTCACACCGCATGAGGTGTGCGTTTATCCAAAAAATACTAAAGTGGAGGAGTCCTATGTCATCAGATGTAATATAACGAAGCTGCAGGAAATCAAAATCGATGCCAGTGTTTTGATACATGATGCTAAGGACAAAGACAAGATCACTGCCACAGGAACATACAGCTTTGATGAGACCATCTATGCTGCGAAGAATACAGATTACAGGAACATCCCGGTGGAGGTGATAATTACGAAGCTGCATGTGACCACATCTAAAGGTTCCATCATCGGAGGATCCATAGGCGGCTTTCtgctcctcttcatcatcattatcGTTCTCATTAAGTGTGGCTTTTTCCGTCGCCGCCATAAAGTGGATCAAGCACAGAGTCCAAACTGAAGCCCGGGAGGAACCCTATATTATCATATATCTTGCTTAAGTTTGTATCAAAATATGTTGTTTGTAAGATGAATGTTATAGTCTTGTTTTATTGTGAGCGTAACattaagaatatgtttttaatgattgtttgtatttaatattgaatatatagaaataattaaatataaaatatgtgtttcTAAATAAATCGAATCCTAAAAAATTCCACAATTAAGGGGCTAACTGCTATTTCCTGATGGATTTTTTTATGATCTATCATTTATTGTATAGCGTCTATTGCAATCAAATGgcaatataaaatttataaacccattttctttaaaaaaaacattattttggttCCCTCACCTGGTTTAGGATGATTTCCCAGCCCGGTCAAGGTCATGTTTAACTAGTTGCATGGTGGTTCATAGTAAGTTGAACAGTTCTCAAAcactttataaaacacacaagcGTATAACCAACTTGCTCGGGCTGGGAGAGCAAAGAGATATCACACTGTTTTGAAACTGGAAATAAAGTCTATAGTGTTCA

Function

NR:

description
integrin alpha-E-like

GO: NA

KEGG:

id description
K06524 ITGAE, CD103; integrin alpha E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259788.1 True 4115 mRNA 0.40 34 10215863 10227750

Neighbor

gene id symbol gene type direction distance location
cul5a cul5,cul5a,LOC107714978,LOC107582587,LOC107554266,LOC107701426,LOC107659927 coding downstream 1259 10204705 ~ 10214604 (-)
trnastop-uca NA coding downstream 12450 10203327 ~ 10203413 (-)
mrpl28 mrpl28,LOC107659942,LOC107701427,LOC107554268 coding downstream 12681 10200476 ~ 10203182 (-)
mos mos,LOC107554270 coding downstream 25765 10188723 ~ 10190098 (-)
lgals17 plin2,LOC107701431,LOC107727929,LOC107701433,LOC107582591,LOC107554272 coding downstream 38837 10164709 ~ 10177026 (-)
LOC122358604 NA coding upstream 24842 10252592 ~ 10254569 (-)
LOC122358606 pim3 coding upstream 31485 10259235 ~ 10261167 (-)
LOC122358607 pim3 coding upstream 36718 10264468 ~ 10266680 (-)
LOC122358608 NA coding upstream 42251 10270001 ~ 10272083 (-)
LOC122358609 NA coding upstream 45139 10272889 ~ 10275968 (-)
G105339 NA non-coding downstream 40264 10173478 ~ 10175599 (-)
G105329 NA non-coding downstream 102843 10112785 ~ 10113020 (-)
G105321 NA non-coding downstream 121873 10086832 ~ 10093990 (-)
LOC122359357 NA non-coding downstream 424688 9780732 ~ 9791175 (-)
G105279 NA non-coding downstream 465374 9749836 ~ 9750489 (-)
G105361 NA non-coding upstream 16198 10243948 ~ 10249609 (-)
G105362 NA non-coding upstream 17714 10245464 ~ 10251995 (-)
G105363 NA non-coding upstream 22058 10249808 ~ 10250125 (-)
LOC122358386 NA non-coding upstream 41454 10269204 ~ 10269968 (-)
LOC122358536 NA non-coding upstream 56272 10284022 ~ 10284472 (-)
dynll2a dynll2a,LOC107554284,LOC103397138 other downstream 418940 9763871 ~ 9796923 (-)
G105059 NA other downstream 660076 9552634 ~ 9555787 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other downstream 779066 9434426 ~ 9436797 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other downstream 1169748 9038896 ~ 9046115 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other downstream 1552999 8657688 ~ 8662864 (-)
atf5b atf5b,LOC107582581,LOC107597512,LOC107717185,LOC107659920,LOC107701416,LOC107713463 other upstream 284881 10512631 ~ 10514062 (-)
cryaba cryaba,LOC107582578,LOC107701412,LOC107713461 other upstream 431184 10658934 ~ 10663588 (-)
igsf9ba LOC107748591,LOC107713446,LOC107699903,LOC107582621,LOC107662765,LOC107597523 other upstream 845531 11073281 ~ 11506177 (-)
LOC122358622 atf5b,LOC107582581,LOC107701416,LOC107713463,LOC107717185,LOC107597512,LOC107659920,LOC107736467 other upstream 1074480 11302230 ~ 11304810 (-)
LOC122358625 LOC107662756,LOC107657263,LOC107729089,LOC107717280,LOC107586244,LOC107709114 other upstream 1098762 11326512 ~ 11342116 (-)

Expression


Co-expression Network