nipsnap2 (gbas,LOC106581053)


Basic Information

Item Value
gene id nipsnap2
gene name gbas,LOC106581053
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 8044822 ~ 8050710 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259180.1
GCGCCCCCAGCGGCAGCGCCGGAGAACCGCAGCCGTTTAACTCCTTCCTCGCCTGCTGTTTGTGTCCTATCGGTGGAAGATGGCGACCAGAGTCCTTCAGAGTTCCTGCTCAGGCCTTCATCAGGCCAGACACGGACACTTCACCGCTGTTATCAGGGGCCTGTCGGCGTCCAGTAACCGGAATCGAGAGGACAGCTGGTTCAAATCCCTGTTTGTGAGGAAGGTGGACCCGAGGAAAGACGCTCACTCCCATCTCCTCGCCAAGAAGGAGGACAACAACTTATATAAGATCCAGTTTCACAACGTGAAGCCCGAGTGTCTGGAGGCCTACAACAAGCTCTGtGATGAGGTGCTGCCGTCCATCCACCGGGACCGGAGTTATCCGTGTGAGCTGGTGGGCACCTGGAACACCTGGTACGGAGAGCAGGACCAAGCCGTGCACTTGTGGCGGTACAGAGGAGGATATCCGGCTCTGACTGAAGTCATGAACAAACTGAAGAATAACAAGGACTTCCTGGAGTACAGGAACGAGAGAGGGAAGATGCTGCTGTCCCGCAGGAACCAGCTGCTGCTGGAGTTCAGCTTCTGGAACGAGCCGGTTCCCCGAGACGGACCCAACATCTACGAGCTGCGCTCCTATCAGCTGAGACCCGGGACCATGATTGAATGGGGCAACTATTGGGCGAGAGCCATCAGCTACCGGCAGCACAACCGCGAGGCCGTGGGTGGGTTCTTCTCTCAGATCGGAGACCTCTACATGGTGCATCATCTCTGGGCGTATAAGGACCTTCAGTCCAGAGAGGACACGAGGAACGCCGCCTGGCAGCACGAGGGCTGGGATGAAGTCGTCTATTACACCGtgcCGCTCATCCAGCACATGGAGTCCAGGATAATGATCCCGCTCAAAGCGTCTCCGCTCCAGTAACGCCTCCATCGCAGTCGTCACGTCTCGTCCCCTTGAGCTCCAGACCAGACCGCATCTTCAGACACCGTCACTGCCGTGATCAAcgtcacacacaacacactcatTCTGATCATCCGAAGTTGCTGTGAGTTTTGAGGCATATCTGAGATCTGCTGGTTGTGTTCTGCTAGGTTTGGTTTGggtctgttaaataaataatcagatgCATTGAATTATCACAAGTGTAGAGTACAAACCCTTTTAGTTTGGTGCGCGATACATCTTTAATATTTCGAAACAAACAGCATATGAATGCCTTAGTTAATGGAGATGTGTCCGAGCTGAATATCATCAGAAAACATTGACTGTATGAAAGCACTGTAACCGCGCTCGAGTGCCGCAATCTCttcatgtatttattgcatatttataagCTGTAAATATAAACCCAACATAAAGAGGATGTCATGTTTTTGTGAAACTGGAGCTGGACGAGACCGCGggcaaaattaactttttgtttttgtttagaaactgtttttttagttgctgtatttttattctgtttgtgtCCACATAGACGtgctttttaaatgcctttCTTGTGTTGTGAAGCGTCTGCAGCTTCTGGATGAAGCTGTTCACCGACAGAACCGCTTTTGCGTGATCGCAGCATGCTCAGTCTACTGATCCCGCGGGATTCAACGGCACGAGATGTCTCAAATCAATCCAATACTGTAATAAATCAGAGATGATCGTTC
>XR_006252682.1
GCGCCCCCAGCGGCAGCGCCGGAGAACCGCAGCCGTTTAACTCCTTCCTCGCCTGCTGTTTGTGTCCTATCGGTGGAAGATGGCGACCAGAGTCCTTCAGAGTTCCTGCTCAGGCCTTCATCAGGCCAGACACGGACACTTCACCGCTGTTATCAGGGGCCTGTCGGCGTCCAGTAACCGGAATCGAGAGGACAGCTGGTTCAAATCCCTGTTTGTGAGGAAGGTGGACCCGAGGAAAGACGCTCACTCCCATCTCCTCGCCAAGAAGGAGGACAACAACTTATATAAGATCCAGTTTCACAACGTGAAGCCCGAGTGTCTGGAGGCCTACAACAAGCTCTGtGATGAGGTGCTGCCGTCCATCCACCGGGACCGGAGTTATCCGTGTGAGCTGGTGGGCACCTGGAACACCTGGTACGGAGAGCAGGACCAAGCCGTGCACTTGTGGCGGTACAGAGGAGGATATCCGGCTCTGACTGAAGTCATGAACAAACTGAAGAATAACAAGGACTTCCTGGAGTACAGGAACGAGAGAGGGAAGATGCTGCTGTCCCGCAGGAACCAGCTGCTGCTGGAGTTCAGCTTCTGGAACGAGCCGGTTCCCCGAGACGGACCCAACATCTACGAGCTGCGCTCCTATCAGCTGAGACCCGGGACCATGATTGAATGGGGCAACTATTGGGCGAGAGCCATCAGCTACCGGCAGCACAACCGCGAGGCCGTGGGTGGGTTCTTCTCTCAGATCGGAGACCTCTACATGGTGCATCATCTCTGGGCGTATAAGGACCTTCAGTCCAGAGAGGACACGAGGAACGCCGCCTGGCAGCACGAGGGCTGGGATGAAGTCGTCTATTACACCGtgcCGCTCATCCAGCACATGGAGTCCAGGATAATGATCCCGCTCAAAGCGTCTCCGCTCCAGTAACGCCTCCATCGCAGTCGTCACGTCTCGTCCCCTTGAGCTCCAGACCAGACCGCATCTTCAGACACCGTCACTGCCGTGATCAAcgtcacacacaacacactcatTCTGATCATCCGAAGTTGCTCGTCTGCAGCTTCTGGATGAAGCTGTTCACCGACAGAACCGCTTTTGCGTGATCGCAGCATGCTCAGTCTACTGATCCCGCGGGATTCAACGGCACGAGATGTCTCAAATCAATCCAATACTGTAATAAATCAGAGATGATCGTTC

Function

NR:

description
protein NipSnap homolog 2-like

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259180.1 True 1665 mRNA 0.51 10 8044822 8050710
XR_006252682.1 False 1195 transcript 0.56 11 8044822 8050710

Neighbor

gene id symbol gene type direction distance location
med17 med17 coding downstream 20646 8018401 ~ 8024176 (-)
trim59 trim59 coding downstream 45595 7995583 ~ 7999227 (-)
ift80 ift80 coding downstream 65276 7960083 ~ 7979546 (-)
si:dkeyp-97b10.3 LOC107750093,LOC107551284,LOC107702998,LOC107701299,LOC107720419,LOC107577739 coding downstream 93610 7934255 ~ 7951212 (-)
lxn lxn,LOC107573187,LOC107573184 coding downstream 236025 7798162 ~ 7808797 (-)
LOC122358760 LOC107551275,LOC107750107,LOC107720462,LOC107572376,LOC107689293,LOC107663740 coding upstream 301620 8352330 ~ 8381497 (-)
trappc6bl trappc6bl,LOC107678240,LOC107684201,LOC107758819,LOC107749664,LOC107561377 coding upstream 478826 8529536 ~ 8533296 (-)
si:ch211-116o3.5 LOC107684197,LOC107561376,LOC107758471,LOC107678253,LOC107749643 coding upstream 482988 8533698 ~ 8539752 (-)
LOC122359137 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 coding upstream 712333 8763043 ~ 8769975 (-)
si:dkey-243k1.3 si:dkey-243k1.3,LOC107672362 coding upstream 724935 8775645 ~ 8779441 (-)
G104692 NA non-coding downstream 28385 8014228 ~ 8016437 (-)
G104714 NA non-coding downstream 31785 8004553 ~ 8013037 (-)
G104711 NA non-coding downstream 44055 7999777 ~ 8000767 (-)
G104696 NA non-coding downstream 85924 7958555 ~ 7958898 (-)
G104682 NA non-coding downstream 117228 7913465 ~ 7927594 (-)
G104732 NA non-coding upstream 63340 8114050 ~ 8115136 (-)
G104749 NA non-coding upstream 197925 8248635 ~ 8254043 (-)
G104751 NA non-coding upstream 201143 8251853 ~ 8254993 (-)
G104753 NA non-coding upstream 216812 8267522 ~ 8267739 (-)
G104757 NA non-coding upstream 228432 8279142 ~ 8279684 (-)
G104695 LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341 other downstream 86591 7957836 ~ 7958231 (-)
G104628 NA other downstream 404483 7639644 ~ 7640339 (-)
G104603 LOC107703035,LOC107750119,LOC107551239 other downstream 472732 7569846 ~ 7572090 (-)
mmp28 mmp28 other downstream 925536 7111256 ~ 7119286 (-)
G104011 NA other downstream 1898305 6146173 ~ 6146517 (-)
zgc:114130 zgc:114130,LOC107758457,LOC107749642,LOC107678256,LOC107560624,LOC107684198,LOC107561367 other upstream 459672 8510382 ~ 8513459 (-)
LOC122359140 pnkp,LOC107561379,LOC107758514,LOC107672387,LOC107749649,LOC107678254,LOC107560617 other upstream 606978 8657688 ~ 8662864 (-)
LOC122359046 camkk1b,LOC107758636,LOC107592750,LOC107752383,LOC107694030,LOC107582651,LOC108410854 other upstream 988186 9038896 ~ 9046115 (-)
G105022 LOC107672415,LOC107582616,LOC107588772,LOC107694024,LOC107752388 other upstream 1383716 9434426 ~ 9436797 (-)
G105059 NA other upstream 1501924 9552634 ~ 9555787 (-)

Expression


Co-expression Network