XLOC_006735 (matn3b)


Basic Information

Item Value
gene id XLOC_006735
gene name matn3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32627444 ~ 32635885 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012964
CCTTCTGTCAAAACTCTCACCGTGAGGCGGAATACCAGCAAGAACGGTCACCTCTGCATTCATCTTCATCAACATGACATGCTTTATTTACGTTTTTGCCTTTTTTCTGTCTGCATTTTTAATGGAGGCGCAGGGCACGTATGGTCCTTACGCGCGGAACCACAACCAGCTGTACGCGGGCCGGCAGAGATCACCTCACATCAGCCCTAATATACCTGGACACGGTAACTCCATCAACATTGGAGCTCCAGCAGAGCCCTGCAAGAGTCGTCCACTTGACCTGGTCTTCATCATCGACAGCTCTCGAAGTGTCCGTCCTGCAGAGTTTGAGAAGGTCAAAATCTTCCTCTCAGAAATGGTTAACTCTCTGGATATCGGATCCGATGCCACAAGAGTCGCGCTGGTCAACTACGCCAGCACCGTCAACATTGAGTTCCATTTGAAAAAGTACTTTAGTAAGGCTGAGGTCAAGCAGGCCTTCTCCCGTATTGATCCACTCTCGACAGGAACCATGACTGGCATGGCTATCAAAACCGCCATGGAGCAAGTTTTTACAGAAAATGCTGGAGCCCGGCCGTTAAAAAAGGGCATTGGTAAAGTGGCCATTATTGTGACAGATGGAAGACCGCAAGATAAAGTCGAAGAGGTGTCAGCAGCAGCAAGGGCTTCTGGGATTGAAATATACGCAGTAGGAGTGGACAGAGCAGAAATGCGGTCCCTCAAGCAGATGGCCAGTCAGCCGCTCGATGACCATGTGTTTTATGTGGAGACATACGGAGTGATCGAGAAACTCACATCCAAGTTTAGGGAAACGCTCTGTGAAGAAGCAAGAGCAGATCTGACTGAAAATGCCTGCATGTGTGAGGCTCAGATTGCCTTTCAGCGGAAAGTTCACAACAGCATACAGACGCTCTCCAGCAGACTGGATGACATCTCAAACAGAGTCCAGCAGTTTGATCTTCGTCGTGCCTAGATTGGAAGATGGGACTCAAAGCTGCTtatctgaataaaataaatagttatttaaacttttattgtaACTGCATGTGCATCCTCGTTTTGTTCATTTAACTGTTAAATATCTGTTCGTCATGTTTTGAGTATTATTTTTGAGTAATCgacatgtcaaaaaaaaaaaaaaaaa
>TCONS_00012966
GCGGAATACCAGCAAGAACGGTCACCTCTGCATTCATCTTCATCAACATGACATGCTTTATTTACGTTTTTGCCTTTTTTCTGTCTGCATTTTTAATGGAGGCGCAGGGCACGTATGGTCCTTACGCGCGGAACCACAACCAGCTGTACGCGGGCCGGCAGAGATCACCTCACATCAGCCCTAATATACCTGGACACGGTAACTCCATCAACATTGGAGCTCATGGCTTTAATCCCAGGTTTTACAGCTATCATCATCCCAACCCTCATCAGCATCATCCCCAGCGGCCGCCCTGGAAAGGGCCTCCCTTCATCTACCACCGCCCTGTACCTATCCAACCTGTCCGGCCAATCTCACCAGTCCAACCTGCCCGGCCAATTGTGCCCTCACTACCCAGAATACCAGTTGTGTTACCTGCCCCTACAGTACCCATGCCAGTGAAACCAATACCCACTCTTCCCCCTCCACCTCCACCTTCAACACAGGCTACGACTACAACCACTACAACCGCTACAACTGCTACAACCTCTACAACGACTACAACTACAACTAGCACAACTACTTCACAGCGGGTCAGTACCCCCCGTGCCACAACTGCCCCTGCCAAGCCTCCCACTGTCCCAGCTCCAGCAGAGCCCTGCAAGAGTCGTCCACTTGACCTGGTCTTCATCATCGACAGCTCTCGAAGTGTCCGTCCTGCAGAGTTTGAGAAGGTCAAAATCTTCCTCTCAGAAATGGTTAACTCTCTGGATATCGGATCCGATGCCACAAGAGTCGCGCTGGTCAACTACGCCAGCACCGTCAACATTGAGTTCCATTTGAAAAAGTACTTTAGTAAGGCTGAGGTCAAGCAGGCCTTCTCCCGTATTGATCCACTCTCGACAGGAACCATGACTGGCATGGCTATCAAAACCGCCATGGAGCAAGTTTTTACAGAAAATGCTGGAGCCCGGCCGTTAAAAAAGGGCATTGGTAAAGTGGCCATTATTGTGACAGATGGAAGACCGCAAGATAAAGTCGAAGAGGTGTCAGCAGCAGCAAGGGCTTCTGGGATTGAAATATACGCAGTAGGAGTGGACAGAGCAGAAATGCGGTCCCTCAAGCAGATGGCCAGTCAGCCGCTCGATGACCATGTGTTTTATGTGGAGACATACGGAGTGATCGAGAAACTCACATCCAAGTTTAGGGAAACGCTCTGTGAAGAAGCAAGAGCAGATCTGACTGAAAATGCCTGCATGTGTGAGGCTCAGATTGCCTTTCAGCGGAAAGTTCACAACAGCATACAGACGCTCTCCAGCAGACTGGATGACATCTCAAACAGAGTCCAGCAGTTTGATCTTCGTCGTGCCTAG
>TCONS_00012965
GCGGAATACCAGCAAGAACGGTCACCTCTGCATTCATCTTCATCAACATGACATGCTTTATTTACGTTTTTGCCTTTTTTCTGTCTGCATTTTTAATGGAGGCGCAGGGCACGTATGGTCCTTACGCGCGGAACCACAACCAGCTGTACGCGGGCCGGCAGAGATCACCTCACATCAGCCCTAATATACCTGGACACGGTAACTCCATCAACATTGGAGCTCATGGCTTTAATCCCAGGTTTTACAGCTATCATCATCCCAACCCTCATCAGCATCATCCCCAGCGGCCGCCCTGGAAAGGGCCTCCCTTCATCTACCACCGCCCTGTACCTATCCAACCTGTCCGGCCAATCTCACCAGTCCAACCTGCCCGGCCAATTGTGCCCTCACTACCCAGAATACCAGTTGTGTTACCTGCCCCTACAGTACCCATGCCAGTGAAACCAATACCCACTCTTCCCCCTCCACCTCCACCTTCAACACAGGCTACGACTACAACCACTACAACCGCTACAACTGCTACAACCTCTACAACGACTACAACTACAACTAGCACAACTACTTCACAGCGGGTCAGTACCCCCCGTGCCACAACTGCCCCTGCCAAGCCTCCCACTGTCCCAGCTCCAGCAGAGCCCTGCAAGAGTCGTCCACTTGACCTGGTCTTCATCATCGACAGCTCTCGAAGTGTCCGTCCTGCAGAGTTTGAGAAGGTCAAAATCTTCCTCTCAGAAATGGTTAACTCTCTGGATATCGGATCCGATGCCACAAGAGTCGCGCTGGTCAACTACGCCAGCACCGTCAACATTGAGTTCCATTTGAAAAAGTACTTTAGTAAGGCTGAGGTCAAGCAGGCCTTCTCCCGTATTGATCCACTCTCGACAGGAACCATGACTGGCATGGCTATCAAAACCGCCATGGAGCAAGTTTTTACAGAAAATGCTGGAGCCCGGCCGTTAAAAAAGGGCATTGGTAAAGTGGCCATTATTGTGACAGATGGAAGACCGCAAGATAAAGTCGAAGAGGTGTCAGCAGCAGCAAGGGCTTCTGGGATTGAAATATACGCAGTAGGAGTGGACAGAGCAGAAATGCGGTCCCTCAAGCAGATGGCCAGTCAGCCGCTCGATGACCATGTGTTTTATGTGGAGACATACGGAGTGATCGAGAAACTCACATCCAAGTTTAGGGAAACGCTCTGTGGTTTCGACGCTTGTGCACATGGGCACAACTGCGAACATATTTGTGTCAGCAACAATGCTTCTTATTTCTGCAAGTGCAGAGAGGGATATGTTATCAACTCTGACAAGAAAACATGCTCTAAACAGACCAACGAAGAAGCAAGAGCAGATCTGACTGAAAATGCCTGCATGTGTGAGGCTCAGATTGCCTTTCAGCGGAAAGTTCACAACAGCATACAGACGCTCTCCAGCAGACTGGATGACATCTCAAACAGAGTCCAGCAGTTTGATCTTCGTCGTGCCTAG
>TCONS_00012967
GTCAAAACTCTCACCGTGAGGCGGAATACCAGCAAGAACGGTCACCTCTGCATTCATCTTCATCAACATGACATGCTTTATTTACGTTTTTGCCTTTTTTCTGTCTGCATTTTTAATGGAGGCGCAGGGCACGTATGGTCCTTACGCGCGGAACCACAACCAGCTGTACGCGGGCCGGCAGAGATCACCTCACATCAGCCCTAATATACCTGGACACGGTAACTCCATCAACATTGGAGCTCCAGCAGAGCCCTGCAAGAGTCGTCCACTTGACCTGGTCTTCATCATCGACAGCTCTCGAAGTGTCCGTCCTGCAGAGTTTGAGAAGGTCAAAATCTTCCTCTCAGAAATGGTTAACTCTCTGGATATCGGATCCGATGCCACAAGAGTCGCGCTGGTCAACTACGCCAGCACCGTCAACATTGAGTTCCATTTGAAAAAGTACTTTAGTAAGGCTGAGGTCAAGCAGGCCTTCTCCCGTATTGATCCACTCTCGACAGGAACCATGACTGGCATGGCTATCAAAACCGCCATGGAGCAAGTTTTTACAGAAAATGCTGGAGCCCGGCCGTTAAAAAAGGGCATTGGTAAAGTGGCCATTATTGTGACAGATGGAAGACCGCAAGATAAAGTCGAAGAGGTGTCAGCAGCAGCAAGGGCTTCTGGGATTGAAATATACGCAGTAGGAGTGGACAGAGCAGAAATGCGGTCCCTCAAGCAGATGGCCAGTCAGCCGCTCGATGACCATGTGTTTTATGTGGAGACATACGGAGTGATCGAGAAACTCACATCCAAGTTTAGGGAAACGCTCTGTGGTTTCGACGCTTGTGCACATGGGCACAACTGCGAACATATTTGTGTCAGCAACAATGCTTCTTATTTCTGCAAGTGCAGAGAGGGATATGTTATCAACTCTGACAAGAAAACATGCTCTAAACAGACCAACGAAGAAGCAAGAGCAGATCTGACTGAAAATGCCTGCATGTGTGAGGCTCAGATTGCCTTTCAGCGGAAAGTTCACAACAGCATACAGACGCTCTCCAGCAGACTGGATGACATCTCAAACAGAGTCCAGCAGTTTGATCTTCGTCGTGCCTAG

Function

symbol description
matn3b Predicted to be active in collagen-containing extracellular matrix. Is expressed in hypochord and notochord. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 5; osteoarthritis; and osteochondrodysplasia. Orthologous to human MATN3 (matrilin 3).

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050221-9 Predicted to be active in collagen-containing extracellular matrix. Is expressed in hypochord and notochord. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 5; osteoarthritis; and osteochondrodysplasia. Orthologous to human MATN3 (matrilin 3).

Ensembl:

ensembl_id ENSDARG00000069265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012964 False 1144 mRNA 0.46 4 32627444 32635885
TCONS_00012966 False 1352 mRNA 0.51 5 32627615 32635859
TCONS_00012965 False 1484 mRNA 0.50 6 32627615 32635859
TCONS_00012967 True 1099 mRNA 0.49 5 32627615 32635879

Neighbor

gene id symbol gene type direction distance location
XLOC_006734 wdr35 coding downstream 1197 32580382 ~ 32626247 (-)
XLOC_006733 kcns3a coding downstream 50058 32575777 ~ 32577386 (-)
XLOC_006731 NA coding downstream 60188 32457931 ~ 32567256 (-)
XLOC_006732 NA coding downstream 132572 32492067 ~ 32494872 (-)
XLOC_006730 NA coding downstream 171451 32069898 ~ 32455993 (-)
XLOC_006736 bend3 coding upstream 5655 32641540 ~ 32648416 (-)
XLOC_006737 pdss2 coding upstream 24659 32660544 ~ 32726178 (-)
XLOC_006738 CU019663.1 coding upstream 157979 32793864 ~ 32807641 (-)
XLOC_006739 rock2a coding upstream 179356 32815241 ~ 32899322 (-)
XLOC_006740 si:dkey-18j18.3 coding upstream 265473 32901358 ~ 32906306 (-)
XLOC_006471 BX537274.2 misc downstream 22362539 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31801219 825904 ~ 826225 (-)
XLOC_006729 BX470107.1 non-coding downstream 564428 32023488 ~ 32063016 (-)
XLOC_006728 NA non-coding downstream 628432 31983061 ~ 31999012 (-)
XLOC_006741 NA non-coding upstream 310826 32946711 ~ 32996496 (-)
XLOC_006752 NA non-coding upstream 625246 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 816553 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 821638 33457523 ~ 33459318 (-)

Expression


Co-expression Network