XLOC_006740 (si:dkey-18j18.3)


Basic Information

Item Value
gene id XLOC_006740
gene name si:dkey-18j18.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32901358 ~ 32906306 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012974
AGCAGCGCTCGTGTTGTGATTGCTGGGAAAATTGGCGCGCGCAACACTTTTATCCTCCTCAGAACAAGACGGTGAGCTAAGGACTGAGAGATGGATAGAAAAGGAAACGTGCGGCGCGCCACTTCGGCTGGCTACCGTTTACCGGACAGACCAAACGGTCCTCTCGCCTCTCAGTCCTCAGTCTCAGTGTTCAGGCATTCAGCGGGCAGGACAAGAAACGGTGAGACACCGGCGCAAAACGAGGACAGTCGAGATCCTGTAAAGCAGGACCAGGTTTGGAGAGAGTTTGTGCGCGCGGAGCGATCCGGCGTGAAGGAATGGGAGAAGAACTGGAGTTTCCTGATGAACTTTGACCAGCTGGGTCACCCGCGTACAGAAACTCCTCTCCCCAACTCTGTGTCTTTATATTCAGACCGACTCCCAAACACCAGTAACCAAATGTTCGGCAGCAGCTTGTACACTGAACTTGGGAATGAACTGGTGCGGCTGGACAATCTGCTAATTCTGACATCCAACCACCGCAAGGCCAAAAGAAATCCAGAGATGCAACCCTGCTGAGGTTTACCAGGCACAAGATGTCTTCAAATTCTCTCTGGTGTATTAGACAGAGATTCTTCCCTTCTCTAGAGATTTTCCCTTGGGTCGTTCTTTTTCTCTCGCCTCTATCTGTTTAAGCTCAATAGTGTTCAGCAGGTTTTTCTGGaagtatttatttttctcttgaCAACCCAAATCCTAGCTGCCaatatgtgtatgcatgtgtgtgtttgctgtaagCTTGGCAGTGTGTTGACagcttgtgatttttttattagattttatgttaACATTAATTTGCATCTTTCAGTGTACTGTATAATGCTGGTGAAGGCAATCAAGATGATCCTGTTAAATGAATAGATTATTTGCTTATTACTTTTTTTGTGGATGAACACAGGTGCTTAGTATATAAATGCAAATAGTTTCAATATCAGTCTCAAACGTTTAGGTTAGAActtatttttctgtatttgtgCATCGAAGGagttacactcttaaaaatatgaGGTTCAAAATATTCATATCAGCATCTAAAGAACCTTTTGTGCAATAGAAAGgttctacactttaaaaaaaaagctttcattcGTCCAATTAAAACAAATTCACGGTTATGGTTCACATCTAATTTTAACACTCgacccaatgaaaaataaataatttgccttaCACAATATTTTCTTTCTCCATGAGAACAATTTTATACAACCTGGTACAAATCATATTTGgcttgttgaataaaatcaaattaaattctcTTTTTATTCTAAACAAGAAGATACAGctttaatcaaaacaacaatTCCCATAAAATGTTTATTCATCCAGTTAAAGAAGTCTAGGGTAATTTCCTAGTTCACATTTAATTTTGCTCACTTGAGccaatgaaaaattaatcagtcgccttaatatttttttaagtccaTATAATTACAAAGCATATTGAGTTTCTGTTTAATTTGCATGCACTGGCCTGTAACCTTTAAATGTTACAttggtcaaaacaaatatttcttagttGAGCTCTTGATCAAAAACTTTTATATTTAACTGTTTTGAACctaaactgaaatgaaagatacatttttaattggatgaTGTACTGCTTGAATTTTCTTTTCAGTGTATATAGAACCATCAATGTCAATAAAGTCccattatttttaagagtgtgctTTAGGTTGCAAGATTGAAAGCCTATACACTAGATGATTAATTCTTTACAGTGAAGTTTACAAATAGTCCTAGCCAACATACATTTTACCCATAGAACATTAGGATTGGAAACAATATTTTGCCAAGAcctacatttacatatttataattatgCCAAATTTTATTCCAATAAagttttcttctcttaaa
>TCONS_00012976
AAACAAGAGAGAATCTCCGCGCAACCGGCGGCGGTGGCGGCAGCAGCGCTCGTGTTGTGATTGCTGGGAAAATTGGCGCGCGCAACACTTTTATCCTCCTCAGAACAAGACGCTAAGGACTGAGAGATGGATAGAAAAGGAAACGTGCGGCGCGCCACTTCGGCTGGCTACCGTTTACCGGACAGACCAAACGGTCCTCTCGCCTCTCAGTCCTCAGTCTCAGTGTTCAGGCATTCAGCGGGCAGGACAAGAAACGGTGAGACACCGGCGCAAAACGAGGACAGTCGAGATCCTGTAAAGCAGGACCAGGTTTGGAGAGAGTTTGTGCGCGCGGAGCGATCCGGCGTGAAGGAATGGGAGAAGAACTGGAGTTTCCTGATGAACTTTGACCAGCTGGGTCACCCGCGTACAGAAACTCCTCTCCCCAACTCTGTGTCTTTATATTCAGACCGACTCCCAAACACCAGTAACCAAATGTTCGGCAGCAGCTTGTACACTGAACTTGGGAATGAACTGGTGCGGCTGGACAATCTGCTAATTCTGACATCCAACCACCGCAAGGCCAAAAGAAATCCAGAGATGCAACCCTGCTGAGGTTTACCAGGCACAAGATGTCTTCAAATTCTCTCTGGTGTATTAGACAGAGATTCTTCCCTTCTCTAGAGATTTTCCCTTGGGTCGTTCTTTTTCTCTCGCCTCTATCTGTTTAAGCTCAATAGTGTTCAGCAGGTTTTTCTGGaagtatttatttttctcttgaCAACCCAAATCCTAGCTGCCaatatgtgtatgcatgtgtgtgtttgctgtaagCTTGGCAGTGTGTTGACagcttgtgatttttttattagattttatgttaACATTAATTTGCATCTTTCAGTGTACTGTATAATGCTGGTGAAGGCAATCAAGATGATCCTGTTAAATGAATAGATTATTTGCTTATTACTTTTTTTGTGGATGAACACAGGTGCTTAGTATATAAATGCAAATAGTTTCAATATCAGTCTCAAACGTTTAGGTTAGAActtatttttctgtatttgtgCATCGAAGGagttacactcttaaaaatatgaGGTTCAAAATATTCATATCAGCATCTAAAGAACCTTTTGTGCAATAGAAAGgttctacactttaaaaaaaaagctttcattcGTCCAATTAAAACAAATTCACGGTTATGGTTCACATCTAATTTTAACACTCgacccaatgaaaaataaataatttgccttaCACAATATTTTCTTTCTCCATGAGAACAATTTTATACAACCTGGTACAAATCATATTTGgcttgttgaataaaatcaaattaaattctcTTTTTATTCTAAACAAGAAGATACAGctttaatcaaaacaacaatTCCCATAAAATGTTTATTCATCCAGTTAAAGAAGTCTAGGGTAATTTCCTAGTTCACATTTAATTTTGCTCACTTGAGccaatgaaaaattaatcagtcgccttaatatttttttaagtccaTATAATTACAAAGCATATTGAGTTTCTGTTTAATTTGCATGCACTGGCCTGTAACCTTTAAATGTTACAttggtcaaaacaaatatttcttagttGAGCTCTTGATCAAAAACTTTTATATTTAACTGTTTTGAACctaaactgaaatgaaagatacatttttaattggatgaTGTACTGCTTGAATTTTCTTTTCAGTGTATATAGAACCATCAATGTCAATAAAGTCccattatttttaagagtgtgctTTAGGTTGCAAGATTGAAAGCCTATACACTAGATGATTAATTCTTTACAGTGAAGTTTACAAATAGTCCTAGCCAACATACATTTTACCCATAGAACATTAGGATTGGAAACAATATTTTGCCAAGAcctacatttacatatttataattatgCCAAATTTTATTCCAATAAagttttcttctcttaaa
>TCONS_00012975
AAACAAGAGAGAATCTCCGCGCAACCGGCGGCGGTGGCGGCAGCAGCGCTCGTGTTGTGATTGCTGGGAAAATTGGCGCGCGCAACACTTTTATCCTCCTCAGAACAAGACGGACTGAGAGATGGATAGAAAAGGAAACGTGCGGCGCGCCACTTCGGCTGGCTACCGTTTACCGGACAGACCAAACGGTCCTCTCGCCTCTCAGTCCTCAGTCTCAGTGTTCAGGCATTCAGCGGGCAGGACAAGAAACGGTGAGACACCGGCGCAAAACGAGGACAGTCGAGATCCTGTAAAGCAGGACCAGGTTTGGAGAGAGTTTGTGCGCGCGGAGCGATCCGGCGTGAAGGAATGGGAGAAGAACTGGAGTTTCCTGATGAACTTTGACCAGCTGGGTCACCCGCGTACAGAAACTCCTCTCCCCAACTCTGTGTCTTTATATTCAGACCGACTCCCAAACACCAGTAACCAAATGTTCGGCAGCAGCTTGTACACTGAACTTGGGAATGAACTGGTGCGGCTGGACAATCTGCTAATTCTGACATCCAACCACCGCAAGGCCAAAAGAAATCCAGAGATGCAACCCTGCTGAGGTTTACCAGGCACAAGATGTCTTCAAATTCTCTCTGGTGTATTAGACAGAGATTCTTCCCTTCTCTAGAGATTTTCCCTTGGGTCGTTCTTTTTCTCTCGCCTCTATCTGTTTAAGCTCAATAGTGTTCAGCAGGTTTTTCTGGaagtatttatttttctcttgaCAACCCAAATCCTAGCTGCCaatatgtgtatgcatgtgtgtgtttgctgtaagCTTGGCAGTGTGTTGACagcttgtgatttttttattagattttatgttaACATTAATTTGCATCTTTCAGTGTACTGTATAATGCTGGTGAAGGCAATCAAGATGATCCTGTTAAATGAATAGATTATTTGCTTATTACTTTTTTTGTGGATGAACACAGGTGCTTAGTATATAAATGCAAATAGTTTCAATATCAGTCTCAAACGTTTAGGTTAGAActtatttttctgtatttgtgCATCGAAGGagttacactcttaaaaatatgaGGTTCAAAATATTCATATCAGCATCTAAAGAACCTTTTGTGCAATAGAAAGgttctacactttaaaaaaaaagctttcattcGTCCAATTAAAACAAATTCACGGTTATGGTTCACATCTAATTTTAACACTCgacccaatgaaaaataaataatttgccttaCACAATATTTTCTTTCTCCATGAGAACAATTTTATACAACCTGGTACAAATCATATTTGgcttgttgaataaaatcaaattaaattctcTTTTTATTCTAAACAAGAAGATACAGctttaatcaaaacaacaatTCCCATAAAATGTTTATTCATCCAGTTAAAGAAGTCTAGGGTAATTTCCTAGTTCACATTTAATTTTGCTCACTTGAGccaatgaaaaattaatcagtcgccttaatatttttttaagtccaTATAATTACAAAGCATATTGAGTTTCTGTTTAATTTGCATGCACTGGCCTGTAACCTTTAAATGTTACAttggtcaaaacaaatatttcttagttGAGCTCTTGATCAAAAACTTTTATATTTAACTGTTTTGAACctaaactgaaatgaaagatacatttttaattggatgaTGTACTGCTTGAATTTTCTTTTCAGTGTATATAGAACCATCAATGTCAATAAAGTCccattatttttaagagtgtgctTTAGGTTGCAAGATTGAAAGCCTATACACTAGATGATTAATTCTTTACAGTGAAGTTTACAAATAGTCCTAGCCAACATACATTTTACCCATAGAACATTAGGATTGGAAACAATATTTTGCCAAGAcctacatttacatatttataattatgCCAAATTTTATTCCAATAAagttttcttctcttaaa
>TCONS_00012977
AAACAAGAGAGAATCTCCGCGCAACCGGCGGCGGTGGCGGCAGCAGCGCTCGTGTTGTGATTGCTGGGAAAATTGGCGCGCGCAACACTTTTATCCTCCTCAGAACAAGACGGTGAGGTTtgctaaaaatattaattcagaACTTTGTTAATTGACCAAAATATAGAAATGCACTTCACCCTGGCTTAGCTAATAAATGGTAATATTTGATTTACGAGCTAAGGACTGAGAGATGGATAGAAAAGGAAACGTGCGGCGCGCCACTTCGGCTGGCTACCGTTTACCGGACAGACCAAACGGTCCTCTCGCCTCTCAGTCCTCAGTCTCAGTGTTCAGGCATTCAGCGGGCAGGACAAGAAACGGTGAGACACCGGCGCAAAACGAGGACAGTCGAGATCCTGTAAAGCAGGACCAGGTTTGGAGAGAGTTTGTGCGCGCGGAGCGATCCGGCGTGAAGGAATGGGAGAAGAACTGGAGTTTCCTGATGAACTTTGACCAGCTGGGTCACCCGCGTACAGAAACTCCTCTCCCCAACTCTGTGTCTTTATATTCAGACCGACTCCCAAACACCAGTAACCAAATGTTCGGCAGCAGCTTGTACACTGAACTTGGGAATGAACTGGTGCGGCTGGACAATCTGCTAATTCTGACATCCAACCACCGCAAGGCCAAAAGAAATCCAGAGATGCAACCCTGCTGAGGTTTACCAGGCACAAGATGTCTTCAAATTCTCTCTGGTGTATTAGACAGAGATTCTTCCCTTCTCTAGAGATTTTCCCTTGGGTCGTTCTTTTTCTCTCGCCTCTATCTGTTTAAGCTCAATAGTGTTCAGCAGGTTTTTCTGGaagtatttatttttctcttgaCAACCCAAATCCTAGCTGCCaatatgtgtatgcatgtgtgtgtttgctgtaagCTTGGCAGTGTGTTGACagcttgtgatttttttattagattttatgttaACATTAATTTGCATCTTTCAGTGTACTGTATAATGCTGGTGAAGGCAATCAAGATGATCCTGTTAAATGAATAGATTATTTGCTTATTACTTTTTTTGTGGATGAACACAGGTGCTTAGTATATAAATGCAAATAGTTTCAATATCAGTCTCAAACGTTTAGGTTAGAActtatttttctgtatttgtgCATCGAAGGagttacactcttaaaaatatgaGGTTCAAAATATTCATATCAGCATCTAAAGAACCTTTTGTGCAATAGAAAGgttctacactt

Function

symbol description
si:dkey-18j18.3 Orthologous to human C2orf50 (chromosome 2 open reading frame 50).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-214 Orthologous to human C2orf50 (chromosome 2 open reading frame 50).

Ensembl:

ensembl_id ENSDARG00000078140

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012974 False 1905 mRNA 0.37 4 32901358 32906265
TCONS_00012976 False 1941 mRNA 0.38 4 32901358 32906306
TCONS_00012975 False 1936 mRNA 0.38 4 32901358 32906306
TCONS_00012977 True 1250 mRNA 0.43 3 32902155 32906306

Neighbor

gene id symbol gene type direction distance location
XLOC_006739 rock2a coding downstream 2036 32815241 ~ 32899322 (-)
XLOC_006738 CU019663.1 coding downstream 93717 32793864 ~ 32807641 (-)
XLOC_006737 pdss2 coding downstream 175180 32660544 ~ 32726178 (-)
XLOC_006736 bend3 coding downstream 252942 32641540 ~ 32648416 (-)
XLOC_006735 matn3b coding downstream 265473 32627444 ~ 32635885 (-)
XLOC_006741 NA coding upstream 40405 32946711 ~ 32996496 (-)
XLOC_006742 rbm25a coding upstream 90714 32997020 ~ 33009734 (-)
XLOC_006743 rbm25a coding upstream 111255 33017561 ~ 33022372 (-)
XLOC_006744 vti1b coding upstream 134130 33040436 ~ 33054856 (-)
XLOC_006745 zfyve26 coding upstream 160299 33066605 ~ 33114934 (-)
XLOC_006471 BX537274.2 misc downstream 22636453 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 32075133 825904 ~ 826225 (-)
XLOC_006731 NA non-coding downstream 334102 32457931 ~ 32567256 (-)
XLOC_006732 NA non-coding downstream 406486 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 445365 32069898 ~ 32455993 (-)
XLOC_006729 BX470107.1 non-coding downstream 838342 32023488 ~ 32063016 (-)
XLOC_006752 NA non-coding upstream 354825 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 546132 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 551217 33457523 ~ 33459318 (-)
XLOC_006768 BX649403.1 non-coding upstream 1732323 34638629 ~ 34638746 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07645586_07647322 NA coding CI01000012 null 7643680 ~ 7647962 (+)