XLOC_006737 (pdss2)


Basic Information

Item Value
gene id XLOC_006737
gene name pdss2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32660544 ~ 32726178 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012970
CCCGGTGCAGCTGTCAAACGTGAGTTCATAAAACTGGACACTTAATTAAAAGCAAGGACTGTCGTTTTCGAATAACGTACTTACATCAACCGGTGACTATCGCTCAATCAGCAGAAGTGACTTATTTGCAGAAGAACAAGAGAGAAGGAGATGTTTACTTCAGTAAGGAGGTGACATTGGGGAGCACAGATACTGCTGGATATGACTCCAAATAAGTGAAAGACAGAGTCAGATCTTTTTGTGAACTTATCTGAACGTTTCAATGAACATTCAGGCGTTTAAATAAGTGGTATTTCAATtgtattagttttaaaatggcttgGAGGTCACGATTGTCTTACTTTGGGCTGAGGCATCTGAGTATTTTCTCGAACCCGTCTCCCTCCAGCTGGACTAAAGTGGTGTCCGATGCGGAGAAGATTGTAGGATATCCGACTTCATTCATGAGTTTACGCTGTTTGCTCAGTGACGAGCTCAGTAATGTGGCCATGCATGTCAGGAAGCTGGTGGGGACGAAACACCCTCTGCTTAACACCGCCAGaggattTGTGTATGACAGCCGGAATAATCTTCAGATGCGAGGACTTGTTGTGCTGCTAATGTCAAAAGCTGCCGGTCCGAGTAGCAGTGACCCGATCCATGACAGTATGGTCAGCGGCATCTACCCCAGccagAGGAACTTGGCAGAGATCACGGAACTGATTCACACGGCCTTCCTGGTGCATCGTGGGATTGTTAATCTGAAGGAATGGACAAACTCGGATGGGCCTCTCAAAGACATGCAGTTTGGGAACAAGATGGCGGTTCTGAGCGGTGATTTTCTGTTGGCAAATGCCTGCACAGGATTGGCTCAGCTCAATGACACCAAGGTGGTGGAGCTGATCTCCAGTGCTATTGGAGATGTGGTGCAAGGAATCTATCACGAGAGCTCAGGTTCTGCAGAGGAGGACAGTCTAACAGTTGCTTCCTGGGAAGACCAGGCATTCCTGTCCCATGGTGCTTTGCTTGCCAAGAGTTGTCAAGCAGCTATGAAGCTGGCCAGACACAATACAGAGGCTCAGAATTTGGCTTTTCAGTACGGAAAACACCTCGCTTTGGGACACAAGCTAAACTCTGAGTTACAGCCGTTTGTGAAGAGCGGCTCAGAAGGGGCTGTGTTTCATTTTGACTCGGCTCCTGTAGTCTTTCACAGACAAATCGTAGGACCTGAGAGATGGCAGCAGCAGCTAAAACAGGCCCAGAATATGTCTAGACAGATTGATTACACCAAGCTCCGGGGCCTGATAAAGATGGAAAGAGGCGTCAGCCAGGCACTTGACCTGTGCAGTTACCACGGCAACAAGGCCTTAGAGGCCATGAAGTGCTTCCCACCCTCAGATGCTCGGTCTGCGCTGGAAAACATGGCCTGTGCCCTCAACAAGTTCTGAAGACGCTTCCAATCTGGATGTATATACGAATACAAATCAGACACAGATCAACACTGAGCCTGTCTGGAATGTGATCATGTTTTTGGCACTGTTTTAAGAggatttactttatatttgtggTTTCTACACAGATGATGATTATAACAGTCGAGTTTACTGGACTTATACTCATTCTATGCACTTGGTCAGAATCagctttatgtttttaaataaaatgagatatgtttttggagaaaaaaaaa

Function

symbol description
pdss2 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process and ubiquinone biosynthetic process. Predicted to be part of transferase complex. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2).

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0008299 isoprenoid biosynthetic process biological_process
GO:1990234 transferase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0004659 prenyltransferase activity molecular_function

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko01006 Prenyltransferases

ZFIN:

id description
ZDB-GENE-040718-43 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process and ubiquinone biosynthetic process. Predicted to be part of transferase complex. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2).

Ensembl:

ensembl_id ENSDARG00000012563

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012970 True 1669 mRNA 0.46 8 32660544 32726178

Neighbor

gene id symbol gene type direction distance location
XLOC_006736 bend3 coding downstream 12128 32641540 ~ 32648416 (-)
XLOC_006735 matn3b coding downstream 24659 32627444 ~ 32635885 (-)
XLOC_006734 wdr35 coding downstream 34297 32580382 ~ 32626247 (-)
XLOC_006733 kcns3a coding downstream 83158 32575777 ~ 32577386 (-)
XLOC_006731 NA coding downstream 93288 32457931 ~ 32567256 (-)
XLOC_006738 CU019663.1 coding upstream 67686 32793864 ~ 32807641 (-)
XLOC_006739 rock2a coding upstream 89063 32815241 ~ 32899322 (-)
XLOC_006740 si:dkey-18j18.3 coding upstream 175180 32901358 ~ 32906306 (-)
XLOC_006741 NA coding upstream 220533 32946711 ~ 32996496 (-)
XLOC_006742 rbm25a coding upstream 270842 32997020 ~ 33009734 (-)
XLOC_006471 BX537274.2 misc downstream 22395639 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 31834319 825904 ~ 826225 (-)
XLOC_006732 NA non-coding downstream 165672 32492067 ~ 32494872 (-)
XLOC_006730 NA non-coding downstream 204551 32069898 ~ 32455993 (-)
XLOC_006729 BX470107.1 non-coding downstream 597528 32023488 ~ 32063016 (-)
XLOC_006728 NA non-coding downstream 661532 31983061 ~ 31999012 (-)
XLOC_006752 NA non-coding upstream 534953 33261131 ~ 33301170 (-)
XLOC_006757 NA non-coding upstream 726260 33452438 ~ 33463644 (-)
XLOC_006758 NA non-coding upstream 731345 33457523 ~ 33459318 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_07769675_07800004 PDSS2 coding CI01000012 null 7769200 ~ 7800241 (+)