RNA id: TCONS_00012970


Basic Information

Item Value
RNA id TCONS_00012970
length 1669
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_006737
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32660544 ~ 32726178 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCGGTGCAGCTGTCAAACGTGAGTTCATAAAACTGGACACTTAATTAAAAGCAAGGACTGTCGTTTTCGAATAACGTACTTACATCAACCGGTGACTATCGCTCAATCAGCAGAAGTGACTTATTTGCAGAAGAACAAGAGAGAAGGAGATGTTTACTTCAGTAAGGAGGTGACATTGGGGAGCACAGATACTGCTGGATATGACTCCAAATAAGTGAAAGACAGAGTCAGATCTTTTTGTGAACTTATCTGAACGTTTCAATGAACATTCAGGCGTTTAAATAAGTGGTATTTCAATtgtattagttttaaaatggcttgGAGGTCACGATTGTCTTACTTTGGGCTGAGGCATCTGAGTATTTTCTCGAACCCGTCTCCCTCCAGCTGGACTAAAGTGGTGTCCGATGCGGAGAAGATTGTAGGATATCCGACTTCATTCATGAGTTTACGCTGTTTGCTCAGTGACGAGCTCAGTAATGTGGCCATGCATGTCAGGAAGCTGGTGGGGACGAAACACCCTCTGCTTAACACCGCCAGaggattTGTGTATGACAGCCGGAATAATCTTCAGATGCGAGGACTTGTTGTGCTGCTAATGTCAAAAGCTGCCGGTCCGAGTAGCAGTGACCCGATCCATGACAGTATGGTCAGCGGCATCTACCCCAGccagAGGAACTTGGCAGAGATCACGGAACTGATTCACACGGCCTTCCTGGTGCATCGTGGGATTGTTAATCTGAAGGAATGGACAAACTCGGATGGGCCTCTCAAAGACATGCAGTTTGGGAACAAGATGGCGGTTCTGAGCGGTGATTTTCTGTTGGCAAATGCCTGCACAGGATTGGCTCAGCTCAATGACACCAAGGTGGTGGAGCTGATCTCCAGTGCTATTGGAGATGTGGTGCAAGGAATCTATCACGAGAGCTCAGGTTCTGCAGAGGAGGACAGTCTAACAGTTGCTTCCTGGGAAGACCAGGCATTCCTGTCCCATGGTGCTTTGCTTGCCAAGAGTTGTCAAGCAGCTATGAAGCTGGCCAGACACAATACAGAGGCTCAGAATTTGGCTTTTCAGTACGGAAAACACCTCGCTTTGGGACACAAGCTAAACTCTGAGTTACAGCCGTTTGTGAAGAGCGGCTCAGAAGGGGCTGTGTTTCATTTTGACTCGGCTCCTGTAGTCTTTCACAGACAAATCGTAGGACCTGAGAGATGGCAGCAGCAGCTAAAACAGGCCCAGAATATGTCTAGACAGATTGATTACACCAAGCTCCGGGGCCTGATAAAGATGGAAAGAGGCGTCAGCCAGGCACTTGACCTGTGCAGTTACCACGGCAACAAGGCCTTAGAGGCCATGAAGTGCTTCCCACCCTCAGATGCTCGGTCTGCGCTGGAAAACATGGCCTGTGCCCTCAACAAGTTCTGAAGACGCTTCCAATCTGGATGTATATACGAATACAAATCAGACACAGATCAACACTGAGCCTGTCTGGAATGTGATCATGTTTTTGGCACTGTTTTAAGAggatttactttatatttgtggTTTCTACACAGATGATGATTATAACAGTCGAGTTTACTGGACTTATACTCATTCTATGCACTTGGTCAGAATCagctttatgtttttaaataaaatgagatatgtttttggagaaaaaaaaa

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0008299 isoprenoid biosynthetic process biological_process
GO:1990234 transferase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0004659 prenyltransferase activity molecular_function

KEGG:

id description
ko00900 Terpenoid backbone biosynthesis
ko01006 Prenyltransferases

ZFIN:

id description
ZDB-GENE-040718-43 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process and ubiquinone biosynthetic process. Predicted to be part of transferase complex. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2).

Ensembl:

ensembl_id ENSDART00000012232

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012963 lncRNA downstream 38021 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 40418 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013861 lncRNA downstream 93288 32556352 ~ 32567256 (-) True XLOC_006731
TCONS_00013496 lncRNA downstream 93304 32525740 ~ 32567240 (-) False XLOC_006731
TCONS_00012971 lncRNA upstream 67686 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00013862 lncRNA upstream 220533 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012984 lncRNA upstream 279140 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013003 lncRNA upstream 534953 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 534953 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00012968 mRNA downstream 12128 32641540 ~ 32648416 (-) False XLOC_006736
TCONS_00012969 mRNA downstream 12162 32645274 ~ 32648382 (-) True XLOC_006736
TCONS_00012964 mRNA downstream 24659 32627444 ~ 32635885 (-) False XLOC_006735
TCONS_00012967 mRNA downstream 24665 32627615 ~ 32635879 (-) True XLOC_006735
TCONS_00012966 mRNA downstream 24685 32627615 ~ 32635859 (-) False XLOC_006735
TCONS_00012972 mRNA upstream 89063 32815241 ~ 32899322 (-) False XLOC_006739
TCONS_00012973 mRNA upstream 90547 32816725 ~ 32898962 (-) True XLOC_006739
TCONS_00012974 mRNA upstream 175180 32901358 ~ 32906265 (-) False XLOC_006740
TCONS_00012976 mRNA upstream 175180 32901358 ~ 32906306 (-) False XLOC_006740
TCONS_00012975 mRNA upstream 175180 32901358 ~ 32906306 (-) False XLOC_006740
TCONS_00012961 other downstream 65324 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 965497 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1013538 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1080980 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1219604 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 885525 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 933530 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1912451 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1917972 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 2456816 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07769675_07800004.mRNA True 2002 mRNA 0.45 10 CI01000012 7769200 ~ 7800241 (+)