RNA id: TCONS_00012974


Basic Information

Item Value
RNA id TCONS_00012974
length 1905
RNA type mRNA
GC content 0.37
exon number 4
gene id XLOC_006740
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 32901358 ~ 32906306 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGCGCTCGTGTTGTGATTGCTGGGAAAATTGGCGCGCGCAACACTTTTATCCTCCTCAGAACAAGACGGTGAGCTAAGGACTGAGAGATGGATAGAAAAGGAAACGTGCGGCGCGCCACTTCGGCTGGCTACCGTTTACCGGACAGACCAAACGGTCCTCTCGCCTCTCAGTCCTCAGTCTCAGTGTTCAGGCATTCAGCGGGCAGGACAAGAAACGGTGAGACACCGGCGCAAAACGAGGACAGTCGAGATCCTGTAAAGCAGGACCAGGTTTGGAGAGAGTTTGTGCGCGCGGAGCGATCCGGCGTGAAGGAATGGGAGAAGAACTGGAGTTTCCTGATGAACTTTGACCAGCTGGGTCACCCGCGTACAGAAACTCCTCTCCCCAACTCTGTGTCTTTATATTCAGACCGACTCCCAAACACCAGTAACCAAATGTTCGGCAGCAGCTTGTACACTGAACTTGGGAATGAACTGGTGCGGCTGGACAATCTGCTAATTCTGACATCCAACCACCGCAAGGCCAAAAGAAATCCAGAGATGCAACCCTGCTGAGGTTTACCAGGCACAAGATGTCTTCAAATTCTCTCTGGTGTATTAGACAGAGATTCTTCCCTTCTCTAGAGATTTTCCCTTGGGTCGTTCTTTTTCTCTCGCCTCTATCTGTTTAAGCTCAATAGTGTTCAGCAGGTTTTTCTGGaagtatttatttttctcttgaCAACCCAAATCCTAGCTGCCaatatgtgtatgcatgtgtgtgtttgctgtaagCTTGGCAGTGTGTTGACagcttgtgatttttttattagattttatgttaACATTAATTTGCATCTTTCAGTGTACTGTATAATGCTGGTGAAGGCAATCAAGATGATCCTGTTAAATGAATAGATTATTTGCTTATTACTTTTTTTGTGGATGAACACAGGTGCTTAGTATATAAATGCAAATAGTTTCAATATCAGTCTCAAACGTTTAGGTTAGAActtatttttctgtatttgtgCATCGAAGGagttacactcttaaaaatatgaGGTTCAAAATATTCATATCAGCATCTAAAGAACCTTTTGTGCAATAGAAAGgttctacactttaaaaaaaaagctttcattcGTCCAATTAAAACAAATTCACGGTTATGGTTCACATCTAATTTTAACACTCgacccaatgaaaaataaataatttgccttaCACAATATTTTCTTTCTCCATGAGAACAATTTTATACAACCTGGTACAAATCATATTTGgcttgttgaataaaatcaaattaaattctcTTTTTATTCTAAACAAGAAGATACAGctttaatcaaaacaacaatTCCCATAAAATGTTTATTCATCCAGTTAAAGAAGTCTAGGGTAATTTCCTAGTTCACATTTAATTTTGCTCACTTGAGccaatgaaaaattaatcagtcgccttaatatttttttaagtccaTATAATTACAAAGCATATTGAGTTTCTGTTTAATTTGCATGCACTGGCCTGTAACCTTTAAATGTTACAttggtcaaaacaaatatttcttagttGAGCTCTTGATCAAAAACTTTTATATTTAACTGTTTTGAACctaaactgaaatgaaagatacatttttaattggatgaTGTACTGCTTGAATTTTCTTTTCAGTGTATATAGAACCATCAATGTCAATAAAGTCccattatttttaagagtgtgctTTAGGTTGCAAGATTGAAAGCCTATACACTAGATGATTAATTCTTTACAGTGAAGTTTACAAATAGTCCTAGCCAACATACATTTTACCCATAGAACATTAGGATTGGAAACAATATTTTGCCAAGAcctacatttacatatttataattatgCCAAATTTTATTCCAATAAagttttcttctcttaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-214 Orthologous to human C2orf50 (chromosome 2 open reading frame 50).

Ensembl:

ensembl_id ENSDART00000113823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012971 lncRNA downstream 93717 32793864 ~ 32807641 (-) True XLOC_006738
TCONS_00012963 lncRNA downstream 278835 32621834 ~ 32622523 (-) True XLOC_006734
TCONS_00012962 lncRNA downstream 281232 32602178 ~ 32620126 (-) False XLOC_006734
TCONS_00013861 lncRNA downstream 334102 32556352 ~ 32567256 (-) True XLOC_006731
TCONS_00013497 lncRNA downstream 336452 32556051 ~ 32564906 (-) False XLOC_006731
TCONS_00013862 lncRNA upstream 40446 32946711 ~ 32996496 (-) False XLOC_006741
TCONS_00012984 lncRNA upstream 99053 33005318 ~ 33009639 (-) True XLOC_006742
TCONS_00013003 lncRNA upstream 354866 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013863 lncRNA upstream 354866 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013001 lncRNA upstream 354866 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00012972 mRNA downstream 2036 32815241 ~ 32899322 (-) False XLOC_006739
TCONS_00012973 mRNA downstream 2396 32816725 ~ 32898962 (-) True XLOC_006739
TCONS_00012970 mRNA downstream 175180 32660544 ~ 32726178 (-) True XLOC_006737
TCONS_00012968 mRNA downstream 252942 32641540 ~ 32648416 (-) False XLOC_006736
TCONS_00012969 mRNA downstream 252976 32645274 ~ 32648382 (-) True XLOC_006736
TCONS_00012978 mRNA upstream 87646 32993911 ~ 32995365 (-) False XLOC_006741
TCONS_00012979 mRNA upstream 87697 32993962 ~ 32995324 (-) True XLOC_006741
TCONS_00012980 mRNA upstream 90755 32997020 ~ 33000649 (-) False XLOC_006742
TCONS_00012981 mRNA upstream 91410 32997675 ~ 33007819 (-) False XLOC_006742
TCONS_00012982 mRNA upstream 94072 33000337 ~ 33007781 (-) False XLOC_006742
TCONS_00012961 other downstream 306138 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1206311 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1254352 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1321794 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1460418 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 705438 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 753443 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1732364 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1737885 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 2276729 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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