CI01000001_01209204_01212045 (PFDN4)


Basic Information

Item Value
gene id CI01000001_01209204_01212045
gene name PFDN4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1209204 ~ 1212252 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_01209204_01212045.mRNA
GCGTAACACTGTTTACAAAAAGGATGTTCAAGAAGCTTCAAGCACTAGCAACCACACCGCCGTTCACGCGCGTGCACGCAGTCCGACTCCGCTTCCCGTTCAAGATGGCAGCCACCATGAAGAAAGGAGTGAAATCTTTACAGAATTTAGAAGATGCCAGTGATGACATCATGATGTGTGAGGATGATGCAATGCTGATCCCGTATCAGATCGGAGACGTGTTCATCAGTCACTCTCAAGAGGAGACACAGGAAATGCTGGAGGCAGCAAAGGAAGCTCTGCAGGACGAGATCAAAGCTCTGGAGGGTCGTGTGTCATCCATACAGGAGGTGCTTGGAGATTTGAAGGTTCAATTATATGCCAAGTTTGGAAACAACATCAATCTAGAGGCAGAAGAGAGCTGAAACCTCACGCATGTGGACTTGACCTCACAGACTGTCATTCTCCAACAGGATATGACATTTCTACTCTAACAACAAGTTCTCGCCCTGTTTATTCTGGTGACGTTTGTTGCATTTCACATGTTATGTTTAGTGAATTATCTGCAAGTGGTTTTGGGGCTGGGTCAATGAAGCATCCAGGAAGAGAGAAAGAGAGGCACTGATGTAAAA

Function

symbol description
pfdn4 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN4 (prefoldin subunit 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_01209204_01212045.mRNA True 611 mRNA 0.46 4 1209204 1212252

Neighbor

gene id symbol gene type direction distance location
CI01000001_01168378_01169553 NA coding upstream 39562 1167517 ~ 1169642 (+)
CI01000001_01088316_01091350 TSHZ2 coding upstream 117626 1088316 ~ 1091578 (+)
CI01000001_00483853_00488761 VWA1 coding upstream 720379 483853 ~ 488825 (+)
CI01000001_00440891_00444667 HTR6 coding upstream 764221 440891 ~ 444983 (+)
CI01000001_00436821_00439097 NA coding upstream 769474 436731 ~ 439752 (+)
CI01000001_01248946_01251200 NA coding downstream 36694 1248946 ~ 1252096 (+)
CI01000001_01357469_01365104 NA coding downstream 145015 1357267 ~ 1365576 (+)
CI01000001_01504275_01507238 NA coding downstream 292023 1504275 ~ 1507494 (+)
CI01000001_01511371_01514291 NA coding downstream 299119 1511371 ~ 1514687 (+)
CI01000001_01517517_01521698 NA coding downstream 304930 1517182 ~ 1522043 (+)
G13191 NA non-coding upstream 4130 1204163 ~ 1205074 (+)
G13188 NA non-coding upstream 8412 1197856 ~ 1200792 (+)
G13190 NA non-coding upstream 12383 1193304 ~ 1196821 (+)
G13187 NA non-coding upstream 23477 1185452 ~ 1185727 (+)
G13180 NA non-coding upstream 32156 1176644 ~ 1177048 (+)
G13434 NA non-coding downstream 74065 1286317 ~ 1286730 (+)
G13435 NA non-coding downstream 74702 1286954 ~ 1288500 (+)
G13442 NA non-coding downstream 90474 1302726 ~ 1378023 (+)
G13492 NA non-coding downstream 198426 1410678 ~ 1411071 (+)
G13493 NA non-coding downstream 204160 1416412 ~ 1416652 (+)
G13051 NA other upstream 164052 1043713 ~ 1045152 (+)
G12614 NA other upstream 898263 309144 ~ 310941 (+)
CI01000001_01668334_01670035 CAMK2N1B other downstream 455768 1667762 ~ 1671167 (+)
CI01000001_03618075_03620436 NA other downstream 2403996 3618075 ~ 3621451 (+)
G15794 NA other downstream 3848966 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 4074497 5279837 ~ 5287698 (+)
G15995 NA other downstream 4499633 5711885 ~ 5714951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022570 pfdn4 coding NC_007134.7 CM002907.2 38151393 ~ 38160024 (-)