sertad3 (sertad3,LOC107670600,LOC107717619)


Basic Information

Item Value
gene id sertad3
gene name sertad3,LOC107670600,LOC107717619
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13594302 ~ 13597214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216803.1
TCTAGATGTTTTTATAGCTTTCTTGTTAACGGATGttgaatttaaatacaattgCAGTTCTTGTTTGAAGATGTTAAAGTGGGGTTTATAAttagtatatttacatttatggacATAAATGGACAAAAACTTGCATTAAGCAAATGCTTGTCTTTAgtataaaaaccaaaaataatatatttatagcataaagaaaaaaaaatattatggacAGGGCGCTTTAACTATCCTGTTTAGATACACAGGAACTAGCAGGTACTTATACTTGAATGTCTATagtatgtattgtatttttgctattttgtacatttaccattttgtatattattctttttattatctgtctcTTGTCTTGTCAtcctgttgcactgtagagcttctgtcactaaaacaaattcctcgtatgcgTAAAcgtacctggcaataaagttgatCGTGATTCTACTACAATACCCGGCGTTCATTTCGCGCGTGACGTCAGAGCTGATTGAATCACTGGCGGGACAAAAAAACTCCAGCAAAACCTCCAGTCACCCGACGCTTCAGCATCGTTATATGATTTACACAAAGCGAATGACTATAAAACTACAAGAGTCCCATCGATTTTGGAGTTGGTTTACATTCGTTACAGCGTGAGAAATGGTGGCCAAGGGACAGAAGCGTAAGCTCCAAAGGGAGGACGAGGGAGGAGGTTCGGCGTGGGAAAGGCAGCTGCAGTCCGTGCTGGACATCTCCATGGATAAGTTCCACCGTCACCAGGCTCTCGTGGAGCCCTGCTTGTTACGGTCAGTTCTGATCAACAACACACTGCGGCAGGTCCAGTCCGAGGTCCAGGCGCAGGTCGAATCGCTGTCCGCTCTGAAAAATTCACAACCGCCTCCTCCAGTGGAGATTAATGCACCTTTGTTCTCGCCGAATGCTGAAAATACGGAGGAGGACTTCATGGCCTGGACCTCAGAGGAGGATTTCTCGCTGTCTTCAGCCATTTCTGCCATTCTTAAAGATCTAGATGCGGCCATCGACGCCGGTCAAGGGCCTTGCGCGTCTCAGCGGGCTCCGCTCGGCTCTGTAGAGAATCTAACGCAGTGTCCCCTGAGGACCGCGAGAACGTCCGACGTGGCATCGGCCGTCAAAACGGAGATGATGCGTCCGGGTTGTCCTCAGGATGTAGCTCTAGATAGACTTCTCCTGAACATCGACGCGTCCGTGTTCGATCCGGAGGTGAACCTTCTGCAGGGTTTCTCCGTAACGGCCGACGATCTAGTGAAGTATCTGCCGTCCCTGTCCAGATCCCCGTCCGCATCCTCTTCCTCGTCTTCAGTCTCCCACATTCAGGCCCCGTGGGAAATCCAGGAGATAGAGCACGTTATGGACATCCTGATGCGGACGTACCCGTAAATCGGTGAAATCGCGTTCCTGATGTAAACGGTTTTTATGGAAGCATGCTGAACGTGCGAGGGATTGAATAAGGCTTTGCTAACCTGACGTTTATCACCTTGAAAGCAGCTGATCTCAATGTCCTGTGGTTAGCAGCAGTCTGCAGTCCTCTGGTTTATGCACATCTTGTTCGGTTTCAAGAAATCCTTTCATGCTAATTAATTCAAGGCGTCATTTAACAGAGTTCAGCACCTGTTATATCAAATCCTTTCAAATGTGCCTTTTCAAATGTTATTCTCCAAAATATGCACTTTCCTTTCGAGTTTAATATGGATACTTATAGTTTACAGGTTACCATTAGGAGTGTTCTTTAAATAGACCAAGGTCATTAAAATGagtgtatattttgtttaaagataTTATGTCCAGTAAGTGTTACGTGAGCATTATGAATACACCGGTGCTGTCTCAGCAGATAAACAAGTAGTTACctatgcaaaatatttactaTGCCAGTATGAAATTATAACGTGAATATTAATCACTTTGTATTCTATtgtactttaaataaagtggTACTTGGTGACA

Function

symbol description
sertad3 Involved in regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of cell growth. Located in nucleus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216803.1 True 1965 mRNA 0.43 2 13594302 13597214

Neighbor

gene id symbol gene type direction distance location
blvrb blvrb,LOC107692505 coding upstream 153 13591816 ~ 13594149 (+)
mmp23bb mmp23bb,LOC107758054,LOC107670598,LOC107672246,LOC107717605,LOC107576217,LOC108440601 coding upstream 68996 13519067 ~ 13525306 (+)
ap2m1b ap2m1b,ap2m1a,LOC107672017,LOC107602122,LOC108440593,LOC107593770,LOC107671693,LOC108264350 coding upstream 79607 13501705 ~ 13514695 (+)
LOC122322886 dvl3,LOC107575491,LOC107758060,LOC107671937,LOC107717599,LOC107670590,LOC106612406 coding upstream 95302 13471097 ~ 13499000 (+)
rnpepl1 rnpepl1,LOC107602123,LOC107758061,LOC107670589,LOC107671854,LOC107575502,LOC107717622 coding upstream 124981 13458970 ~ 13469321 (+)
LOC122323172 LOC107560134,LOC107692493,LOC107733301,LOC107670597,LOC107717611,LOC107602107 coding downstream 272815 13870029 ~ 13873265 (+)
rbm7 rbm7,LOC107755678,LOC107739154 coding downstream 526182 14123396 ~ 14126844 (+)
barx2 barx2,LOC107670639,LOC107692488,LOC102779973 coding downstream 533285 14130499 ~ 14147187 (+)
smtla LOC107709547,LOC107590731,LOC107692520,LOC107656966 coding downstream 980956 14578170 ~ 14583254 (+)
fli1 fli1,LOC107692484,LOC107656981 coding downstream 1106946 14704160 ~ 14727887 (+)
G126098 NA non-coding upstream 50527 13543253 ~ 13543775 (+)
G125887 NA non-coding upstream 223521 13369713 ~ 13370781 (+)
G125886 NA non-coding upstream 224791 13367416 ~ 13369511 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding upstream 242572 13350491 ~ 13351730 (+)
G125879 NA non-coding upstream 247365 13346678 ~ 13346937 (+)
LOC122323141 NA non-coding downstream 14845 13612059 ~ 13693855 (+)
G126128 NA non-coding downstream 46184 13643398 ~ 13644760 (+)
G126139 NA non-coding downstream 212065 13809279 ~ 13840132 (+)
G126143 NA non-coding downstream 236430 13833644 ~ 13887497 (+)
G126178 NA non-coding downstream 318524 13915738 ~ 13917760 (+)
rpl35a rpl35a,LOC107673417,LOC107670602 other upstream 163537 13427044 ~ 13430765 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other upstream 372154 13216484 ~ 13222148 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other upstream 638357 12946841 ~ 12955945 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other upstream 668834 12917226 ~ 12925468 (+)
G125836 NA other upstream 709690 12880588 ~ 12884612 (+)
daw1 daw1,LOC107727686,LOC107576612,LOC107717604 other downstream 73075 13670289 ~ 13706114 (+)
G126132 foxa3,LOC107717614,LOC107692498,LOC107602118,LOC107727696,LOC107575381,LOC107670595 other downstream 81831 13679045 ~ 13682571 (+)
lbhl lbhl other downstream 264657 13861871 ~ 13869332 (+)
G126175 NA other downstream 312350 13909564 ~ 13912800 (+)
G126146 gramd1bb other downstream 342881 13940095 ~ 13941369 (+)

Expression


Co-expression Network