CI01000001_07492000_07496973 (SPSB1, SPSB4)


Basic Information

Item Value
gene id CI01000001_07492000_07496973
gene name SPSB1, SPSB4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7491422 ~ 7496973 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07492000_07496973.mRNA
ATGGGGCAGAAGGTTCCGGGAGGCATAAAGACTGTGGACATGCGGGACCCGGCGTTTCGGCCTCTCAAGCTAGAGCTGCAGGCCCTAGACTACACCAAGCCTTCCCGCCTGGATATGTTGTTAGACATGCCATCAGCCTCGCAGGATGTTCAAGTGCAGCACTCGTGGAACAATGATGACCGGTCGCTTAACATCTTTGTTAAAGAGGATAATAAACTCATATTTCATCGGCACCCTGTAGCGCAGAGTACAGATGCTATCCGGGGCCGAGTGGGATACACACGGGGACTGCATGTGTGGGAGATCAGCTGGGCCATGCGCCAGCGGGGCACCCATGCTGTTGTTGGTGTGGCGACGGGTGAAGCCCCGTTGCATTCTGTAGGATACACTGCACTTGTAGGAAACAATAGCGAGTCCTGGGGCTGGGACCTGGGACGTAACAAACTCTATCATGATGGCAAGAACCAGCCCAGTAGGACGTATCCAGCTTTTCTTGAGCCTGATGAGACGTTTATTGTCCCAGACTCGTTTTTGGTGGTCCTGGACATGGACGAGGGGACTTTAAGTTTTATTGTCGACGGACAATATTTAGGGGTTGCTTTCAGAGGACTCAAAGGAAGGAAGCTATACCCTGTAGTGAGTGCTGTGTGGGGACACTGTGAAATCAGAATTCGGTACATCAATGGACTTGATCCTGAACCTCTGCCATTAATGGACCTCTGTAGGCGCTCGGTACGGGTCGCGCTGGGGAGAGAACGACTGAGTGAAATCCATGGACTGCCCTTACCTGCCTCCCTTAAGAACTACTTGCTCTACCAATGATGATAGTAGTGCCTTTTACAATTCAAGGCATAGCATCCGCCTCGGTTTCTCTCTGGGATTAATCTTTTGTCTGGCAAGCCTGTTTCATTACATCTTTGTTTTGGTTTCGGTGCCATTCTCGGTCACTGGGTATGGTACCAACAATATTTTTTACAAATCAGACCAAGGGTGTCTCATGCTTGATGCCTTCAGGATCAAGTGTGGCATCGTCTCTTGCTTCGCTCAGACTGGAAATCCACCTGAAAGCTTTCGCTGGAATTCTGTGGCAGATATGAAAACAAGAACCCTTCTCCACTCTAATCATGGCTTAGTGAAACTTCAGCTGTTTGTCAAGGCCTTTTCCTTTTATAATTGTTTTTTACTCCATCCTTTTTTTTTCTTTTTTTAAGAAAAATGAGATGTTGGCGTCTTTCTTGTATCATGTCATTAACTTGAGGGTCCATATAGTGACTCTTTGCAGGCAATGCAAAATACATTACCTTCTCAAGACCTTTAGGCTTAACAACCAGCAAATTTTTGTTGATATTGACTTTTTTATGTTTTTCAATTGTCCTTCCCCTTGCGGTCAGTATAATAAA

Function

symbol description
spsb1 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; gonad; muscle; and otic vesicle. Orthologous to human SPSB1 (splA/ryanodine receptor domain and SOCS box containing 1).
spsb4 Enables ubiquitin ligase-substrate adaptor activity. Involved in cellular protein metabolic process; positive regulation of protein polyubiquitination; and regulation of circadian rhythm. Located in cytosol.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07492000_07496973.mRNA True 1400 mRNA 0.47 2 7491422 7496973

Neighbor

gene id symbol gene type direction distance location
CI01000001_07399727_07402300 NA coding downstream 87740 7399645 ~ 7403682 (-)
CI01000001_07382559_07385351 NA coding downstream 105792 7382227 ~ 7385630 (-)
CI01000001_07311570_07321107 NA coding downstream 170052 7310661 ~ 7321370 (-)
CI01000001_07270003_07290702 PHC2A coding downstream 200654 7269685 ~ 7290768 (-)
CI01000001_07137510_07187079 EPHB2, EPHB2B coding downstream 304343 7137510 ~ 7187079 (-)
CI01000001_07565885_07567962 NA coding upstream 68397 7565370 ~ 7567962 (-)
CI01000001_07568083_07573146 CA6 coding upstream 71110 7568083 ~ 7573339 (-)
CI01000001_07609855_07631058 NA coding upstream 112847 7609820 ~ 7631285 (-)
CI01000001_07769921_07796135 NA coding upstream 272116 7769089 ~ 7796547 (-)
CI01000001_07807093_07808245 NA coding upstream 308940 7805913 ~ 7808493 (-)
G17968 NA non-coding downstream 47310 7442317 ~ 7444112 (-)
G17941 NA non-coding downstream 92207 7395664 ~ 7399215 (-)
G17929 NA non-coding downstream 138791 7352084 ~ 7352631 (-)
G17922 NA non-coding downstream 153097 7336456 ~ 7338325 (-)
G17911 NA non-coding downstream 223470 7251311 ~ 7267952 (-)
G17998 NA non-coding upstream 17192 7514165 ~ 7514513 (-)
G18004 NA non-coding upstream 29543 7526516 ~ 7526770 (-)
G18005 NA non-coding upstream 30211 7527184 ~ 7527481 (-)
G18010 NA non-coding upstream 55864 7552837 ~ 7553209 (-)
G18011 NA non-coding upstream 56525 7553498 ~ 7553712 (-)
CI01000001_06932075_06937182 NA other downstream 554199 6931621 ~ 6937231 (-)
G17789 NA other downstream 601008 6837525 ~ 6890414 (-)
G16753 NA other downstream 875833 6583054 ~ 6615589 (-)
G16664 NA other downstream 1143467 6344104 ~ 6347955 (-)
G18023 NA other upstream 259528 7756501 ~ 7757520 (-)
G18223 NA other upstream 429131 7926104 ~ 7928517 (-)
CI01000001_09804494_09811219 NA other upstream 2312684 9804429 ~ 9811219 (-)
G20136 NA other upstream 3042054 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 3365252 10862225 ~ 10865770 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022334 spsb1 coding NC_007134.7 CM002907.2 22496314 ~ 22523303 (-)