CI01000001_07769921_07796135


Basic Information

Item Value
gene id CI01000001_07769921_07796135
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7769089 ~ 7796547 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07769921_07796135.mRNA
ACCTTCTCCTGCCTGGTGTGTCTACAAATTATACAAGTAAATAATTAAAATCAAGTGTCAGGTGCTTGGTGCCCATGGTCCATGAGGAGCCAGGCACATTTTTCCCTCCCAAGTTCCCTAGTTTCCTAGGCAACAAAGTTAAGGTACTTTAACAGTCTGTTCCTGGTTTGGTTCTCCCTTACCCCATCTTGCTTTATCTCTCTCCTTCTTGCTGAATCTAGATGTGGTGGTGTCTGTCATCTTCTAGTGATCAATCAGCACCCAAACAAGCAGGGTCTTTGATGCTTGCAGAGAGAAAAAAAGAAAAGAAATAGAGAGCGAGAGAGAGGAGGAGAGAAAAGTTTCCTTTTGACGAGCATGTTCCATTGTGAGAATCCCCAGCAGCCTCTGACATCTGGTTCCAGTTAGCACCATGACGCGTTTCCTGCCTGCCTGGGCCACGGTTCACAAGTCAAACGCCACACTGAAGATTGAGGAGAAAAACAGACACGCACGGTTACTCCAATATTATCTGCATTTGTCGTCATTGAGCAATCACTCTTCAGTGCTGAAGAGGTACCCGAGCGATAAGCAATGGAAAAGTGTGACCCTCGAGAACGTGGGGCGTGGAATGCAAAATGTGCGCTGCACCTACACAAACTCTGGAGGGAAACCCTACAGTCAGTGGACTATATTAAATCCCTCTCACAGCGAAGGTGTCATGTTGCGGCTGCCGCTTTATAGCTGGTGCCGGAGCAGACTGGTGGTGAGGAGTGGCGGCATTATCCGCATGCAGAGGAATGTCTTGACCCCCACCATTCCCAGCAACTTCAGAAATCAAATCGGTCAGGTGGCAGCGGGGAACGCTGGTGTCTCGGTATGTTCCTGCCAACGAAATGAAGGGGAGAGGATCGCGGAGCCCTGCGGTCACGCCACCCCGGTTCTCCTCAAACCAGCCGGAGCTAGAGTCATCAGAGCACATATGGATGAACGGGCTGTAAAGCACATGGAGAGACGAGCAAAGATAAGGCTTTTTCCAGAATACAAGGTGAAAAAAGCCAACAGAGCTATGCATTTTAACATCTTCTTTCTGATATTTCAGCAGGCCGTGGTGCATTTACCCCTGGCGTGTGAGTTTATCACCTACCGGCTCGAGAGTTGTCTGCTATGCTGGAGTCAGACATGGAGATGGACTCGGGGAAGATTAATTGCACTATGGAGGTGTGAAGAAAAACAAAGAACAATCTATCTGTGTCTGGGAAATCGGACAGCCCCACAGAGAGGCAAGTGAGCGCACTGGCACAGCGATCTATCACAGGACGCTCATTACACACAAGGTCAGGGTGCTCCCTGTCTCTATGGCCCCAGAGAACATCTAGTTCCTGCATGTGGTTTCACCTGAAGCCCTCTGGGCAACCACAGGCCAACATCTTAACAGTATGGGTTTAACATCTGAGTGTGTTTTCATTAGGGCATGATGAACATGAAGAGCTTATGTATTCATATTCAAGCTGTGTCGCTGTGCATCTCAACATGTTCAGCACACCTTAGAGCAATCAGTTCTGTTGGAAGCAGATAATCACTGTCTCTCTCAAGTTGAAATAATGACCCAGCACTACTTCACACAGGCTTTTAGTAAGATTACTGTTTCATCAAGAAAATTAGAAGTACGGTAAGAAACACATACATACTTACTCTAACTTTCAGAATTCCCTCCCCTGTACGAGTAGAGCATATACTGTATAAGGTGCAAAAGCTGTAAAAACATCAGATTTACATGCAGCAATACCTGTTTGGTGTTCAGATACTTGGCCTAGTTATGGTGAGGTAGTAAGAAATAAGTAGGATATATCATGCCGCCAAGTGCACTTCAGAAGATTATTCTTCAGAGTTGGGCATTCGTTATTATGGCATCACATATTAAATTCGAAAAACCATCAAGTTCAATAATTGAAAATGCTGAAAATCATTTCTATCATTTATACGTTATCTAACAAGCATAAGATGTTTATCTAAATTTATATTTTGTATAAAACAATGCATGAAAGGTAAGTGATTAACTTTACATTTGTTATATATATATATATATATATATATATATATATATATATATAAAAAATAAA
>TU20425
CCTTCTTGCTGAATCTAGATGTGGTGGTGTCTGTCATCTTCTAGTGATCAATCAGCACCCAAACAAGCAGGGTCTTTGATGCTTGCAGAGAGAAAAAAAGAAAAGAAATAGAGAGCGAGAGAGAGGAGGAGAGAAAAGTTTCCTTTTGACGAGCATGTTCCATTGTGAGAATCCCCAGCAGCCTCTGACATCTGGTTCCAGTTAGCACCATGACGCGTTTCCTGCCTGCCTGGGCCACGGTTCACAAGTCAAACGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07769921_07796135.mRNA False 2102 mRNA 0.44 6 7769089 7796547
TU20425 True 259 lncRNA 0.41 1 7796086 7796344

Neighbor

gene id symbol gene type direction distance location
CI01000001_07609855_07631058 NA coding downstream 137804 7609820 ~ 7631285 (-)
CI01000001_07568083_07573146 CA6 coding downstream 195750 7568083 ~ 7573339 (-)
CI01000001_07565885_07567962 NA coding downstream 201127 7565370 ~ 7567962 (-)
CI01000001_07492000_07496973 SPSB1, SPSB4 coding downstream 272116 7491422 ~ 7496973 (-)
CI01000001_07399727_07402300 NA coding downstream 365407 7399645 ~ 7403682 (-)
CI01000001_07807093_07808245 NA coding upstream 9366 7805913 ~ 7808493 (-)
CI01000001_07875805_07905655 NOC2L coding upstream 79191 7875738 ~ 7905655 (-)
CI01000001_07953501_07958007 NA coding upstream 156686 7953233 ~ 7958007 (-)
CI01000001_08036532_08037745 HER9, HES4 coding upstream 239679 8036226 ~ 8038004 (-)
CI01000001_08109635_08112413 NA coding upstream 313063 8109610 ~ 8112517 (-)
G18141 NA non-coding downstream 31605 7728123 ~ 7737484 (-)
G17950 NA non-coding downstream 180616 7586506 ~ 7588473 (-)
G17951 NA non-coding downstream 182991 7584537 ~ 7586098 (-)
G18017 NA non-coding downstream 193954 7574901 ~ 7575135 (-)
G18015 NA non-coding downstream 213035 7555678 ~ 7556054 (-)
G18171 NA non-coding upstream 2483 7799030 ~ 7799626 (-)
G18222 NA non-coding upstream 109978 7906525 ~ 7906850 (-)
G18239 NA non-coding upstream 138607 7935154 ~ 7935374 (-)
G18243 NA non-coding upstream 172903 7969450 ~ 7969723 (-)
G18023 NA other downstream 11569 7756501 ~ 7757520 (-)
G17911 NA other downstream 515835 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 831866 6931621 ~ 6937231 (-)
G17789 NA other downstream 878675 6837525 ~ 6890414 (-)
G16753 NA other downstream 1153500 6583054 ~ 6615589 (-)
G18223 NA other upstream 129557 7926104 ~ 7928517 (-)
CI01000001_09804494_09811219 NA other upstream 2013110 9804429 ~ 9811219 (-)
G20136 NA other upstream 2742480 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 3065678 10862225 ~ 10865770 (-)
G20230 NA other upstream 3225580 11022127 ~ 11028777 (-)

Expression


Co-expression Network