CI01000001_07953501_07958007


Basic Information

Item Value
gene id CI01000001_07953501_07958007
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7953233 ~ 7958007 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07953501_07958007.mRNA
ATGGATGACTTTGAATACAGCGTGCACATCTCGGACCAAGATTGGGACTGTTTTTTTCAGGAGTGCGAGGACTGTGACCTGCTCTCTCCAGTGCTTGCCAGCCGAGAGGACTCTGGTATGAGTGACATTGATGAGATGGGCTGCCACTTTCTAGACAGGACCCTGGCTGTGGACACAGCATCCACAGAGCCTGATCCAGACCTTCAGATTGATGGCCCGCCAGACTGTGAGGGATCACCTGTGTATAATTACCTCAGCAAGTACGGAATACGTAGTCCAGAGCAGGTTCTCTCTGGCAGTGAGGAAGACTTGCACCTTCAGACTGTCAATCTGTTCTTTGAGCAGTTAAAAAGTGTCACAGAAAACGAACAGCAATTGGAACAAAGCCACGTTTTCAATTGGGGAAGTGAGGAGACAGGCCATCTGGAGGGTTTGATTGATAAGCAGGATATTCTGTCTGTAGATACTGGTCCATCTGGCAGAAATGAGGCCAGTCTTATAGGTAAAATTGCTAAGCAGGGTGTGGTTAATACCTGGGGTGATATAGCCTCAGAAAAAGCTAGAAAGCCTGAATCCGCTAATGCACAAGAAGATGCATCAAAGTCTAACACTGAGCTACTTATTGGAGGGAAGGCATTGTCAACTCCCCTAATTACAGTAAGAATGAAAGATAAGCACCAGGGAAGATGTGGTGATATCAGCAAAGACTTGAAACCTGAAACAAAGCCACCTGACAAAGAGAAAATGGTAACGGTTAATAGGAAAGATATGGCAGACCCAATTCCAGCAAGACAAAATATTGCTCAACTGGATACCAGAAACAGTTTTGACTCAAAAGATTCTGCAGTCAGTCAGATCCCAGTGTCACCTTCCAATCTCAGGAGAAAGAGGAGGAAAAAGAAGAGAATTGGTATCGAACCAGTAGAACCAGGATGTGAGGCTCAGATCCACATCCATCAAAGTGAATCAGAGGAAGAGAGATTCATTCAGAGGGAAGAGATGAATAACCTTCCTTCAAATGTCTGGAAGACAGAGCACATATCACTTCAAAGAAGTAAAACAACACAAAATACTGATCTTTTACAGCCTAGAAACATGTTTGACTTTGAGGCTTCCGCTGATTTGAAGTCTTCAAAAAGCTTGCCAGTATCTTTTACCAGTAATTTCGGCACCATACCTTTAAAGCCTGAAGCTGTACACACAAGCTTTAATACTATGTCCAAAAGCATGCATGACATGTCTCTTGTAAACAAAGGACAATTGAAAACAGAGATTCCCCCATTACCCAGGATAGATAAAGTTCTGAATTTACAAGAAAGTGGATTAAATATGGTTAAATTTGATCCTGCTTTACACTTAGAGACTTGGACCGGTATTAGAGAGACCTTATCAGCACCTCTAAATGATAATTCTGATGCAGGATATCAGAGGAAATCCTTATTATCTCCTAACATTTCCATTGCTGCTGATTCAACAGAACCTCCTTCCTCCATAGTCTCTTTTAAATTGACTAAAGACAAAGATATATCCTGTTTAGGAAATGAGACTGACTGTTCAGTATTTAAAAATGAACAAACCATGACAAGCAAAAGGAATTTCGTAGAAATTTCAGACTCCAAAGAAAGCAGCTTGTCTTTAACTGAGAAAATGGATGGAGTAGAAACTTGCTTGGATGGTCCAGAAACATTTACTTGTTCACAGGATGCCCCTCAAAAACAAAAATTATGTATTCAAATGAACATTTCAGAATATCAAAGCAATTCGACCCCTCAAATCATTGAAATAAACATGAATATACCTATAAACGAGACAGATGCAAAGACGGAGAGACCTATGTCTGATAATATTTATCATAGAACAGATGAAAGTCATATCCAAAGCAGAAATGAGACTAGTGAAGCATTAATTGTGAATGCCTCACCCATAAAGCCAGGGAATTCATATGAATCAGACGATAAGAGAGACATCAGTGCTAATGAGGTTGCTGTTTCAGCCAGTGGTGAACAACTATTTTGTGGCAAGTCCACCAGATCTAGTGAACACATAAGTGGTCCTACACAAGATGTTTCAGAGTTGCCTCATAATACACTTGCTGAAATGAAGTACACTTCCTCAGCTGAGTCGAAAAGTGGAGCCAAAGATCTGGAGAGTGTTTCTCTTGATGCTGCAGATCATCTTCCATGCCCTGTGTATGCCATCTCATCCTTCTGGAATGAAATGGAGAAGCTAACCATCAATGACATATTGCGTATACGGCAAATTGGTAACACCCAGCAAACCAGCGTTTTGACCCAGCTGGAGGATGGTAGCATTGCGGACACTACAGATGCTGGAGACTCTGGTTACTTTACACAACCTGACGACTCCAAGCCGGACCGCTTAAGTGGAGATATGTCTTACATATCTGATCTGGACGAAGACCTTGCACAGCTTCAAACCCCATTTTCTTCAAAGCAAGAGGACGAGTCGTGTGAGATCCCTAGCTCTTGTGGTGTGATGTGGGAGAATGATTCAGATCCAGTAGTTGCGGGTGACGAAATGGTGATCATAAGTTCGGAAACCACTCTTCCTGAACATCTCTACACGGCTAATGCTCAACAGTGTTTCAGAAGAATGTGTAAGAACATTAGTGTGCAGAACCTGCAAGCTCTAGATGCTCAACCAATCAGGAAAATACTCAGAAATGCCTCTATGCATTCAATCTATTCAGAGGTAGATGATTTCATAGATCCTTTTTACCATGTGAACACTTCAGGCTCAAAGAGCTTGTCTGATGATGAAGAGGAAGTAGAAACCAGTGGCATCACGTTTTCTGAAATAATCCAGTATCTCTTCGGTGAGGATGAACCTGAGCGTTGTGCGTCTCGTGCAGACAACATAGCTGCTTTGCACCTTGATGGAACAGGCACTTCTCTGCCTGAGATGTATGACCATTTCTTCTCAGAGTTTGATGCTGGAAGCTTTGTTTATCCAATTGTGGAAGAGTCAAGTGGAGATAAAATAGTTCCCATTTTCTCCTGCTCCCGCACAGCTAACAGAAACCTTCAGTTCCCAGAGGCATATGACTATTTCTTCCCAGATTCCCCTGGGAATTCAGACGAAGATGAGGAGAACGAGAACACGGTTATCAAGGTAGTGACACGGTATGACCATAAGTCTCCCAACCATGATCCTGTTGACATGTATGAGCACTTCTTTTCTGAAGATCAGAGTGACTTCCTCTGGACGAACCCTCTTTCACTTAGAAGAGTTCGGCGCACAGGTTTTACCATCCCTGAAGAGAATACATGTTCTGGGGAACTCGTCCCTGTAAAAACATTTCCCAAAGGAATCATTCAGCCTATTAATGCTCTGGGCCCTAATGGGAGCACTTTCCCAGATTCCTTGCTCCTCAACCTGGAGAACAGCATCTTCCAGCAACTGGCTGAGCAACAGAAGAAGTGTATGGAGATGCAGACAGTTGTTGCTGATCCAAGGTTGGATGCCCCATTCTTGCCTCTTAAACAGGCAGACATGTGCTTGGTGTGTATTGCTTTTGCCTCGTGGGTGCTGAAATCGACAGGTTCAGGAGCAGACACCTGGAAAGCTGCTCTTCTTGCGAACATCAGTGCACTCTCGGCAATACGATACCTGCGCAGACACAAGAGGGAGGAGGTCTCTGGAAAAACTTCTTTGCGTCAGATAGAGTCAGCATAACTCCTCCAGGTCTGATTTCAATCACATCACCCTTTTTCCATGTAATCCAAAAGGGTGATGATGAATGTCAAACGTGCATGCAGGACATTTTCCATCATTCTCAGTATATATTATTATGATTAATACTCTCCTGTGTATTTATTGCTGATGAACTTAGTTGATAAACTTGATACACAATAGATGACTGTGACTTCAGACCAGTGACAGTAGTGTTTATAATATGTATCTTTCGTGTTTAAACATTTCAGTAATCTGCATATCCATTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07953501_07958007.mRNA True 3964 mRNA 0.43 3 7953233 7958007

Neighbor

gene id symbol gene type direction distance location
CI01000001_07875805_07905655 NOC2L coding downstream 47578 7875738 ~ 7905655 (-)
CI01000001_07807093_07808245 NA coding downstream 144740 7805913 ~ 7808493 (-)
CI01000001_07769921_07796135 NA coding downstream 156686 7769089 ~ 7796547 (-)
CI01000001_07609855_07631058 NA coding downstream 321948 7609820 ~ 7631285 (-)
CI01000001_07568083_07573146 CA6 coding downstream 379894 7568083 ~ 7573339 (-)
CI01000001_08036532_08037745 HER9, HES4 coding upstream 78219 8036226 ~ 8038004 (-)
CI01000001_08109635_08112413 NA coding upstream 151603 8109610 ~ 8112517 (-)
CI01000001_08190314_08198511 NA coding upstream 232198 8190205 ~ 8198771 (-)
CI01000001_08245959_08246775 NA coding upstream 286645 8244652 ~ 8246775 (-)
CI01000001_08386044_08386700 RNF223 coding upstream 427371 8385378 ~ 8387124 (-)
G18239 NA non-coding downstream 17859 7935154 ~ 7935374 (-)
G18222 NA non-coding downstream 46383 7906525 ~ 7906850 (-)
G18171 NA non-coding downstream 153607 7799030 ~ 7799626 (-)
G18243 NA non-coding upstream 11443 7969450 ~ 7969723 (-)
G18248 NA non-coding upstream 17977 7975984 ~ 7976201 (-)
G18277 NA non-coding upstream 74198 8032205 ~ 8032488 (-)
G18300 NA non-coding upstream 126725 8084732 ~ 8084946 (-)
G18375 NA non-coding upstream 242615 8200622 ~ 8217227 (-)
G18223 NA other downstream 24716 7926104 ~ 7928517 (-)
G18023 NA other downstream 195713 7756501 ~ 7757520 (-)
G17911 NA other downstream 699979 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 1016010 6931621 ~ 6937231 (-)
G17789 NA other downstream 1062819 6837525 ~ 6890414 (-)
CI01000001_09804494_09811219 NA other upstream 1851650 9804429 ~ 9811219 (-)
G20136 NA other upstream 2581020 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 2904218 10862225 ~ 10865770 (-)
G20230 NA other upstream 3064120 11022127 ~ 11028777 (-)
G20319 NA other upstream 3152830 11110837 ~ 11114747 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022342 si:dkey-98j1.5 coding NC_007134.7 CM002907.2 23254976 ~ 23256726 (-)