CI01000001_08036532_08037745 (HER9, HES4)


Basic Information

Item Value
gene id CI01000001_08036532_08037745
gene name HER9, HES4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8036226 ~ 8038004 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08036532_08037745.mRNA
AGATTCGACTTGCCCTCTGAAGCGCTACGCAACTTACGCTCGTGTCCTCATATGACAGCCTGCCGACTATAAGTCATATAACGTTAGCTGATAAGAGGGACTCACACTCTCTCTCGTGACCATCCCGAGATCTTGGCTACGCTCCGCGTCTAATCCTAAGAGCCCGTCTCTGTGTTTAAAAAAAACACCACACGGAATATAAACACTTTTTTGGCTTATACCGGACCCGACTTTGGTTTTGATAATGCCAGCCGATAATATGGAGAAGCAGACCGCATCACCTATTGCTGGTGCCCCTGCCAGTGGATCTCATACTCCGGACAAACCAAAGAATGCCAGCGAGCACAGAAAGTCTTCAAAGCCAATCATGGAGAAACGCCGCAGAGCGAGAATTAACGAGAGCCTTGGACAGCTGAAGACCCTGATACTCGATGCTCTTAAAAAAGATAGCTCCAGACACTCTAAATTGGAGAAAGCTGATATTCTTGAGATGACAGTCAAGCACCTGCGCAATTTGCAGCGTGTTCAGATGACCGCGGCCCTGTCAGCTGACACAAACGTCCTCAGCAAATACCGCGCAGGATTCAACGAGTGCATGAACGAGGTGACCCGGTTTCTCTCTACCTGCGAGGGGGTGAATGCGGAGGTTAGGTCGCGACTTCTCAACCACCTGTCTGGTTGTTTGGGACAGATGATGGCCATGAACTACCCTCAACCTGCCCCATCTCAGCAGGCTCATTTGGCTCAGCCTCTTCACGTGCAGCTTCCTTCAACTTTGCCCATCAACGGCGCCTCAATGGGCTCCAAACTCAGTCCTTCAGAAGCGGTTTCACCTAAAGTCTTTGGAGGATTCCAGCTGGTGCCAGCCACCGACGGACAGTTTGCTTTTCTTATCCCCAACCCAGCTTTCGCTTCTGCTACAACCCCAGTCATTCCCTTGTACGCAAACGCAAGTGTTCCAGTGGCTGTCAACGCCAGTCCCGTCCAGGCCAGCTCAGCTCCCACGGTGGCATCTCCCGTGCAGGGAATGACCTCCTTCGCGGGCGTTTCACAGGCCGTCAGTCCCGTTGGTGTTAGTGCCGGAGCAGAAAGCAATGAACCGGTGTGGAGACCTTGGTAGACTTGCTCATCCCATACAAACTTTCTAAAACAGTTTTTCATGATGAAGAAAATACGTTCAGTTCCGTTATAAGGGACTTTGTTGACCTTCTGTTGGACAATGCGCGTATGTTTGTTAGCTGATTCCAATATTTGGATGTTGTTAATGAATATTCTGTTGTTAATTCAACAGAATAACACTTAATGTTTATAAAGTACTTTTTTAAATGAAAGAATTTAGTTTTGTACAAAGTTTGTAAAAGATTATATCATGCCAAAGCTTTCTTGTTTCTTTCATGATGAGTGTTTATGTTTGATGCTGAATAAA

Function

symbol description
her9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of neurogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; neural plate; presumptive hypochord; and pronephros. Orthologous to human HES4 (hes family bHLH transcription factor 4).
hes4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K06054 HES1; hairy and enhancer of split 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08036532_08037745.mRNA True 1426 mRNA 0.47 4 8036226 8038004

Neighbor

gene id symbol gene type direction distance location
CI01000001_07953501_07958007 NA coding downstream 78219 7953233 ~ 7958007 (-)
CI01000001_07875805_07905655 NOC2L coding downstream 130571 7875738 ~ 7905655 (-)
CI01000001_07807093_07808245 NA coding downstream 227733 7805913 ~ 7808493 (-)
CI01000001_07769921_07796135 NA coding downstream 239679 7769089 ~ 7796547 (-)
CI01000001_07609855_07631058 NA coding downstream 404941 7609820 ~ 7631285 (-)
CI01000001_08109635_08112413 NA coding upstream 71606 8109610 ~ 8112517 (-)
CI01000001_08190314_08198511 NA coding upstream 152201 8190205 ~ 8198771 (-)
CI01000001_08245959_08246775 NA coding upstream 206648 8244652 ~ 8246775 (-)
CI01000001_08386044_08386700 RNF223 coding upstream 347374 8385378 ~ 8387124 (-)
CI01000001_08454713_08460418 ARHGEF19 coding upstream 416391 8454395 ~ 8460567 (-)
G18277 NA non-coding downstream 3738 8032205 ~ 8032488 (-)
G18248 NA non-coding downstream 60025 7975984 ~ 7976201 (-)
G18243 NA non-coding downstream 66503 7969450 ~ 7969723 (-)
G18239 NA non-coding downstream 100852 7935154 ~ 7935374 (-)
G18222 NA non-coding downstream 129376 7906525 ~ 7906850 (-)
G18300 NA non-coding upstream 46728 8084732 ~ 8084946 (-)
G18375 NA non-coding upstream 162618 8200622 ~ 8217227 (-)
G18309 NA non-coding upstream 216229 8254233 ~ 8256863 (-)
G18311 NA non-coding upstream 303867 8341871 ~ 8345333 (-)
G18302 NA non-coding upstream 308669 8346673 ~ 8349134 (-)
G18223 NA other downstream 107709 7926104 ~ 7928517 (-)
G18023 NA other downstream 278706 7756501 ~ 7757520 (-)
G17911 NA other downstream 782972 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 1099003 6931621 ~ 6937231 (-)
G17789 NA other downstream 1145812 6837525 ~ 6890414 (-)
CI01000001_09804494_09811219 NA other upstream 1771653 9804429 ~ 9811219 (-)
G20136 NA other upstream 2501023 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 2824221 10862225 ~ 10865770 (-)
G20230 NA other upstream 2984123 11022127 ~ 11028777 (-)
G20319 NA other upstream 3072833 11110837 ~ 11114747 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location