CI01000001_07807093_07808245


Basic Information

Item Value
gene id CI01000001_07807093_07808245
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7805913 ~ 7808493 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07807093_07808245.mRNA
AGTAGGCCTATCTTTAACACAGGTCTGACCTGAACACTGTTCGAAACTAAAGTATATGAAGTAGATGTTTGGTACATGAAAAAAATAACAATAAAGCATATACTTGTGAAATCTAAAAATATTTAAAAGTTGTTTCACTTAAAATGTTGCTTTTAAAGTTTCCTGTTGGTCTACCTATTATTAAACCGATTCCTCAGTGTAAGAAATGTCAATAACTTTTCTCCATATTCTCTCAGTGACTGTGGTCGATGCCCAGAGACCTGTCGGCTGTAGAGAACCCCCTTGCAGTCGACCCCGCCTCCGCGCCGTTGTTGGCAGCGGCCCCGGAGCCACAGCGCTGCCGGCGGGGGAGAGAGGTTCTCATAAAAGAAGACTTCTATTGGATTTTAAATGGACTCTCCAAAGGGACTTTCGGGATCACAGTTGCCAGCTCATGCAGCGCCGGTAAAGTGATGCTGTGTAATATAAAACCCTGCGCGTCTCCTCAGGTTTGTGCTGTCGTGTCGGCGCCCTCCACTGCTCTCTGGAGATCTAGAGGCCGTGGAGGCAGTCTGTGATCCCAACCGGCAGCCCAAGCTACCTCATGGGATTTATTTCCTTGCTGGACAGGTGGGCGGCCAGGGAGGATACTGGTTTTAGCCCAGTGTCTGAAGCTGTCAACACCATCAGAAGCAACGAAACCTCTTCCCTTTTTCTTCCCTAAACACTTCACTTTACCATTCCTAATGGCTAGGCTAGTTTGGGATCTGTAAGATATTTTAAATGTTTTTGGAAGAAATACAGTATGATTGAAATACAGTAAAACAGTAACAATTATTACAATTTAAAATAACTATTTTAAAATGCAATTTATTCCTGTGATGGTGAATTTTCGGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAAAATTCCTTATCTTCACTGTTGAAAACAGTTGTGCTGCTGAAAATCATGATTAAATACTGATCCTTTGAACTTTCTATTTATCAAAGAATCCTGAAAAAAACATTTATTTTAAATAGAAACCTTTTGTAGCATTATAAATGTCTTTACTGTCACTTTTAATAAATGTAATGCATCCTTGCTGAATGAAAGTATTAATTACTTTCAAAGATAAAATATCTTTCTGACTTTTGAACGGTATTGTACTGTACACACATACAAAACACCAGCTTTGTTCTCAAGGACACTGGGACTAATTCTACCATTACTGTAGGCCAAGACATTGACATCACGTTATGCACATGGTCTTGTGACTTATTCAAACTGGAAATACTCACAGATAATGTCATGACTTTGATTCCAAAGCTAGTAGATCAGCCACAAACTCGCCTGCATAGCTTGAATACATGCTGTAAATAGAAAGAAAAAAAGTCTGTGTTATTGACAACAGTGTCATACTATGTTTGTGCCAAGCTGTGAAAGGAACATAAATTATTCCTTATCTCATCTGCAATCCATTTTACAAAAGGTCCAACAATATATAGAGGGTATCAAAGAAAGCTAACAGTTAGCCCTCCACAAAATTGCATTTATAGGCCATTTATTTAGGCCACACCAACAGCTGAAATGTGTGGAATTATTTTGAGATAACCAGTAAAATAAGACTTAAGATAAGTCTGCTGCTGCTTTCCAAGTATCTAAGAGGAAATCATCAGACAAGAAACATGTGCTGGGGAAAAAAAAGAATAAA
>TU20445
AAAAATTCCTTATCTTCACTGTTGAAAACAGTTGTGCTGCTGAAAATCATGATTAAATACTGATCCTTTGAACTTTCTATTTATCAAAGAATCCTGAAAAAAACATTTATTTTAAATAGAAACCTTTTGTAGCATTATAAATGTCTTTACTGTCACTTTTAATAAATGTAATGCATCCTTGCTGAATGAAAGTATTAATTACTTTCAAAGATAAAATATCTTTCTGACTTTTGAACGGTATTGTACTGTACACACATACAAAACACCAGCTTTGTTCTCAAGGACACTGGGACTAATTCTACCATTACTGTAGGCCAAGACATTGACATCACGTTATGCACATGGTCTTGTGACTTATTCAAACTGGAAATACTCACAGATAATGTCATGACTTTGATTCCAAAGCTAGTAGATCAGCCACAAACTCGCCTGCATAGCTTGAATACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07807093_07808245.mRNA False 1737 mRNA 0.39 2 7805913 7808493
TU20445 True 449 lncRNA 0.33 1 7806254 7806702

Neighbor

gene id symbol gene type direction distance location
CI01000001_07769921_07796135 NA coding downstream 9366 7769089 ~ 7796547 (-)
CI01000001_07609855_07631058 NA coding downstream 174628 7609820 ~ 7631285 (-)
CI01000001_07568083_07573146 CA6 coding downstream 232574 7568083 ~ 7573339 (-)
CI01000001_07565885_07567962 NA coding downstream 237951 7565370 ~ 7567962 (-)
CI01000001_07492000_07496973 SPSB1, SPSB4 coding downstream 308940 7491422 ~ 7496973 (-)
CI01000001_07875805_07905655 NOC2L coding upstream 67245 7875738 ~ 7905655 (-)
CI01000001_07953501_07958007 NA coding upstream 144740 7953233 ~ 7958007 (-)
CI01000001_08036532_08037745 HER9, HES4 coding upstream 227733 8036226 ~ 8038004 (-)
CI01000001_08109635_08112413 NA coding upstream 301117 8109610 ~ 8112517 (-)
CI01000001_08190314_08198511 NA coding upstream 381712 8190205 ~ 8198771 (-)
G18171 NA non-coding downstream 6287 7799030 ~ 7799626 (-)
G18141 NA non-coding downstream 68429 7728123 ~ 7737484 (-)
G17950 NA non-coding downstream 217440 7586506 ~ 7588473 (-)
G17951 NA non-coding downstream 219815 7584537 ~ 7586098 (-)
G18222 NA non-coding upstream 98032 7906525 ~ 7906850 (-)
G18239 NA non-coding upstream 126661 7935154 ~ 7935374 (-)
G18243 NA non-coding upstream 160957 7969450 ~ 7969723 (-)
G18248 NA non-coding upstream 167491 7975984 ~ 7976201 (-)
G18277 NA non-coding upstream 223712 8032205 ~ 8032488 (-)
G18023 NA other downstream 48393 7756501 ~ 7757520 (-)
G17911 NA other downstream 552659 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 868690 6931621 ~ 6937231 (-)
G17789 NA other downstream 915499 6837525 ~ 6890414 (-)
G16753 NA other downstream 1190324 6583054 ~ 6615589 (-)
G18223 NA other upstream 117611 7926104 ~ 7928517 (-)
CI01000001_09804494_09811219 NA other upstream 2001164 9804429 ~ 9811219 (-)
G20136 NA other upstream 2730534 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 3053732 10862225 ~ 10865770 (-)
G20230 NA other upstream 3213634 11022127 ~ 11028777 (-)

Expression


Co-expression Network