G17950


Basic Information

Item Value
gene id G17950
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7586506 ~ 7588473 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU20188
TTCCATTTTAATAGGGATAATTTATTTGTTATGCCACGCATATAGAACTAACAATTCTCAAAAGCAACACAACACTGCAGCACAGTGAACAGCATTAGCTCTCTCCTAAAATACTCAGTGGAGCACCAGAATCACTACAACTCACAAGAAGCTGAACAAAGATCTCTCACACAACACGGAGACACAATTAAAGGACTGATGCTATTTGGATACCAAAGCATAGATGGGGATGGGGAGAAGGGGCTGTCACGGAGAGCAGTGTGTACTGTGCCATACACTACAGGTCTGGACATTTGAATTCACTGTTTTTCCTTCTACTCTCCATTCTACAGGAGCTGGCTTTGCGTGGCGTTATGTGTGGGAGAGTAAGCACGATGAGCACACTAAGACTGATGACAGGCTGCCGCTTCAGATGGGCCTCCTGAAGTTCTTGCCAGCGAAACGAGCCTTGTCACCAAGCTCCTCCTCAATCCTCAGCTGATTGTACTTGGCTAGGCGCTCAGACCGGCAGGGAGCACCAGTCTTGATCTGAGGGGAAAAAAGACAATTTACTTTGTGATCCCATATACAGCATTGGGCGGCCATAGATAAGAGGGTGTTTAGCAAGCCATGTACCTGGCCAGTGCAGAGTCCGACCACAAGGTCAGCGATGAAGGTGTCCTCTGTCTCTCCAGAACGGTGGCTGACCATCACACCCCATCCATTAGACTGGGCCATCTTACAGCTAAACAAAGGAAAACAGAAACAAAACACATTACATACAAAAACCAAATGTATTTAAAATGCATTTTAGTTAGTTTTTATTTAAAAATATCCACAACCATTGTGTGAGATATCAGAAACACTCACGCCTGAAGGGACTCTGTGACGGAGCCGATCTGGTTGACTTTGAGCAGCAGGCAGTTGCAGGCCTTATCAGACACAGCTTTGGCGATGCGCTTGGGGTTGGTCACTGTAAGGTCATCACCCACCACCTGGATGTTAGTGCTGGCAGTGAAGTTGGTCCAGGCCTCCCAGTCATCCTGGTCAAATGGATCCTCAATGGAGACCACTGAAAAGCAAAGATGACACTTTATTGATTTGGGCTGGAGCGGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU20188 True 1098 lncRNA 0.47 2 7586506 7588473

Neighbor

gene id symbol gene type direction distance location
CI01000001_07568083_07573146 CA6 coding downstream 13167 7568083 ~ 7573339 (-)
CI01000001_07565885_07567962 NA coding downstream 18544 7565370 ~ 7567962 (-)
CI01000001_07492000_07496973 SPSB1, SPSB4 coding downstream 89533 7491422 ~ 7496973 (-)
CI01000001_07399727_07402300 NA coding downstream 182824 7399645 ~ 7403682 (-)
CI01000001_07382559_07385351 NA coding downstream 200876 7382227 ~ 7385630 (-)
CI01000001_07609855_07631058 NA coding upstream 21347 7609820 ~ 7631285 (-)
CI01000001_07769921_07796135 NA coding upstream 180616 7769089 ~ 7796547 (-)
CI01000001_07807093_07808245 NA coding upstream 217440 7805913 ~ 7808493 (-)
CI01000001_07875805_07905655 NOC2L coding upstream 287265 7875738 ~ 7905655 (-)
CI01000001_07953501_07958007 NA coding upstream 364760 7953233 ~ 7958007 (-)
G17951 NA non-coding downstream 408 7584537 ~ 7586098 (-)
G18017 NA non-coding downstream 11371 7574901 ~ 7575135 (-)
G18015 NA non-coding downstream 30452 7555678 ~ 7556054 (-)
G18012 NA non-coding downstream 32475 7553795 ~ 7554031 (-)
G18011 NA non-coding downstream 32794 7553498 ~ 7553712 (-)
G18141 NA non-coding upstream 139650 7728123 ~ 7737484 (-)
G18171 NA non-coding upstream 210557 7799030 ~ 7799626 (-)
G18222 NA non-coding upstream 318052 7906525 ~ 7906850 (-)
G17911 NA other downstream 333252 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 649283 6931621 ~ 6937231 (-)
G17789 NA other downstream 696092 6837525 ~ 6890414 (-)
G16753 NA other downstream 970917 6583054 ~ 6615589 (-)
G16664 NA other downstream 1238551 6344104 ~ 6347955 (-)
G18023 NA other upstream 168028 7756501 ~ 7757520 (-)
G18223 NA other upstream 337631 7926104 ~ 7928517 (-)
CI01000001_09804494_09811219 NA other upstream 2221184 9804429 ~ 9811219 (-)
G20136 NA other upstream 2950554 10539027 ~ 10539850 (-)
CI01000001_10862471_10864514 NA other upstream 3273752 10862225 ~ 10865770 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G157367 NA unknown NC_056721.1 CM032090.1 13141078 ~ 13217408 (-)