G141920 (phactr1,LOC107739173,LOC107655832,LOC107557022)


Basic Information

Item Value
gene id G141920
gene name phactr1,LOC107739173,LOC107655832,LOC107557022
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25054807 ~ 25059921 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU209575
CACGGATGTCATTCCCGCGGCTGCAGTTACTGCAGATGTGCTTGATGTGACCGGAGATCACAAACGGCGTGTTGTTGTTACCGGGGGCGGTGGGCTGCCGCAGTTTGACTAGGTTAAAGGCTCTCCGTTTGCGCGGTTTCTCCGcggacgacgacgacgacgacagCGACGAGGAAGACGACGCGTCCTCCCGCAGCCGGGATGCGATCCAGGTCCCGTGCGCTCCGGTGAATGCGGGACCCGCCATGGGCGCAGCGGCGGCGGCGGACCCGTGTCTATCCGTCACACCCCGGGATGGTGCGGATATCGAACGGAAGAGCGAGTTCATGAGCCTCACCGATCATCCCGAGCCGCGCGAACCGGGGTTATATCACCGACGCCACGCGCAAAACGTTTGGCCCACCTGAGTataaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
phactr1 Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase inhibitor activity. Acts upstream of or within vasculature development. Predicted to be located in cytoplasm; nucleus; and synapse. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 70. Orthologous to human PHACTR1 (phosphatase and actin regulator 1).

NR:

description
PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209575 True 513 lncRNA 0.61 2 25054807 25059921

Neighbor

gene id symbol gene type direction distance location
c20h8orf82 LOC107669429,LOC107728113,LOC107704038,LOC107567028,LOC107739166 coding downstream 187629 24865459 ~ 24867178 (-)
naprt naprt,LOC107704039,LOC107669423 coding downstream 192967 24852469 ~ 24861840 (-)
hlx1 hlx,hlx1,LOC107704027,LOC107567024,LOC107739182,LOC107728099 coding downstream 221817 24829849 ~ 24832990 (-)
mia3 mia3,LOC107739181,LOC107568205 coding downstream 333701 24699172 ~ 24721106 (-)
brox brox,LOC107710643,LOC107732498,LOC107704042,LOC107568230 coding downstream 363718 24682627 ~ 24691089 (-)
tbc1d7 tbc1d7,LOC108443239,LOC108260306 coding upstream 16567 25076488 ~ 25085331 (-)
wu:fi04e12 LOC107739175,LOC107672942,LOC107567016,LOC107661358,LOC107728115 coding upstream 26249 25086170 ~ 25102714 (-)
LOC122325515 LOC107739175,LOC107661358,LOC107728115,LOC107672942,LOC107567016 coding upstream 44317 25104238 ~ 25116679 (-)
psmg4 LOC107671085,LOC107661364,LOC107739191,LOC107728114,LOC107572584 coding upstream 88221 25148142 ~ 25150522 (-)
bphl bphl coding upstream 91291 25151212 ~ 25153120 (-)
G141936 NA non-coding downstream 2900 25046771 ~ 25051907 (-)
G141931 NA non-coding downstream 12549 25039692 ~ 25042258 (-)
G141911 NA non-coding downstream 31876 25018694 ~ 25022931 (-)
G141908 NA non-coding downstream 89254 24961254 ~ 24965553 (-)
G141899 NA non-coding downstream 107037 24936671 ~ 24947770 (-)
G141941 slc22a23,LOC107739176,LOC107572580,LOC107578994 non-coding upstream 6814 25066735 ~ 25131192 (-)
G141943 NA non-coding upstream 9061 25068982 ~ 25119763 (-)
G141951 NA non-coding upstream 105317 25165238 ~ 25168599 (-)
G141966 NA non-coding upstream 158608 25218529 ~ 25305703 (-)
G141972 NA non-coding upstream 217223 25277144 ~ 25325809 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 203028 24838652 ~ 24851779 (-)
G141651 NA other downstream 407386 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 522444 24524069 ~ 24532363 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other downstream 537064 24254393 ~ 24517743 (-)
G141502 NA other downstream 1048142 24004687 ~ 24006665 (-)
mettl24 LOC107738893 other upstream 234923 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other upstream 266587 25326508 ~ 25377416 (-)
G142058 NA other upstream 588571 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 687746 25747667 ~ 25754008 (-)
LOC122324466 samd15 other upstream 990908 26050829 ~ 26054469 (-)

Expression


Co-expression Network