tbc1d7 (tbc1d7,LOC108443239,LOC108260306)


Basic Information

Item Value
gene id tbc1d7
gene name tbc1d7,LOC108443239,LOC108260306
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25076488 ~ 25085331 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043218712.1
ACACGAGGACGCGAACGACTTCCGGGGTCACGGGACTGCGGACAGCCGCGTTTGCAGATGTACGCGTTCTTTCTGAGAATTAAAGATGATAATATGCATTGAATGCGAATTGAAGTCAGATGTTTGACCGATAGAGCGTTTGAAGAGTCTCTCGGCTGAGAAAAACCGCTGAGGTCTGCCCCCTGagCTTCACATCGGCGATCATGGCTGATGATCCTCAGAGGAACTTTCGCTCGGCGTATTATGAGAAAGTGGGTTTCAGAGGAGTGGAGGAGAAGAAATCGCTTGAGATCCTGCTGAAGGACAATCCTCTGGATGTGGAGAAGCTGAGCACCTTCAGTCAGAGGTTTCCGCTGCCCTCCATGTACCGGATACACGTGTGGAAAGTCCTGCTGGGCATCCTGCCGCCCCACACGGACTCTCACGCGCTGGTGTCTCGCTATCGGCTCGAGCAGTTCGAGGACGTGAGCGGCGCTCTGACGGCCATGCGCTTCGTCCACGCCTCCACCCCGGCCACGGAGCTCTACCTGCGCATGTACCAGCTGGAGAGCAGACAGCTGCCCCGCAGGAGCGAGCTCAGGCCGCCGGTGAGGAGCTACGGGATTGATGATGAGGATGAAAACTTCCTGTCTATCAGCAGAGCGATGGAGGAGATCGTCGAGGACCCGGTCGACTGCTACTGGCTCGTCAGGTGCTTCGTCAACCAGTTCAAGATCAAGTTTGGAGACTCCGTCCCTCACCTGCCGAAGAGTTTGGAGCACTTCCTGTCTCAGGAGGACGCAGCTCTTCTGGCTCATCTGAAGGTGTCCGGCGCCCTGCACTCGCTGCCGTACTGTCTCTGGTTCAGACGCTGCTTCGCTGGCTGTTTACCCGAGTCCAGCCTGCAGAGGGTTTGGGATAAAGTCATCAGCGGCTCCTGTAAGATCCTGGTGTTTGTTGCCATGGAGATTCTGCTCAGCTATAAGATCATGCTGATGGGAATGAATGACCCGGATGGAGTTTACAACTTCCTGTCTAACATGCCGCAGGAGAACACGGACGCCATCGTCACTAAAGCCATCGACCTGTGGCACAAGCACTGCGGGACGCCCATGCACTCTGTCTAATTCATCCTCTCCAGCTGTGTTTGAGAAGCTGCGTACGTCATTCAGGACACGCCTCCCGCTCTCTGAGCCAATAGCAGCAGCGGAAGAGAGACCGGAAACAGAAACGCATCAATcttgcgtgcgtgcgtgtgtgtgtgtgtgtgtgcgtgcatgtgtcaTTTTACACccttatgtcgttccaaacctgtacgagtTCATATGTAAGATCAGGAAAAGTGCTTCAAGTCTCAAAaatcagggggaaaaaaaatggcatgtaGGCTTGGAACAAATGAAGGTGATAAAGTCagattttctatatatatatatatatatatatatatatatatata
>XM_043218713.1
CACGAGGACGCGAACGACTTCCGGGGTCACGGGACTGCGGACAGCCGCGTTTGCAGATGTACGCGTTCTTTCTGAGAATTAAAGATGATAATATGCATTGAATGCGAATTGAAGTCAGATGTTTGACCGATAGAGCGTTTGAAGAGTCTCTCGGCTGAGAAAAACCGCTGAGGTCTGCCCCCTGagCTTCACATCGGCGATCATGGCTGATGATCCTCAGAGGAACTTTCGCTCGGCGTATTATGAGAAAGTGGGTTTCAGAGGAGTGGAGGAGAAGAAATCGCTTGAGATCCTGCTGAAGGACAATCCTCTGGATGTGGAGAAGCTGAGCACCTTCAGTCAGAGGTTTCCGCTGCCCTCCATGTACCGGATACACGTGTGGAAAGTCCTGCTGGGCATCCTGCCGCCCCACACGGACTCTCACGCGCTGGTGTCTCGCTATCGGCTCGAGCAGTTCGAGGACGTGAGCGGCGCTCTGACGGCCATGCGCTTCGTCCACGCCTCCACCCCGGCCACGGAGCTCTACCTGCGCATGTACCAGCTGGAGAGCAGACAGCTGCCCCGCAGGAGCGAGCTCAGGCCGCCGGATGATGAGGATGAAAACTTCCTGTCTATCAGCAGAGCGATGGAGGAGATCGTCGAGGACCCGGTCGACTGCTACTGGCTCGTCAGGTGCTTCGTCAACCAGTTCAAGATCAAGTTTGGAGACTCCGTCCCTCACCTGCCGAAGAGTTTGGAGCACTTCCTGTCTCAGGAGGACGCAGCTCTTCTGGCTCATCTGAAGGTGTCCGGCGCCCTGCACTCGCTGCCGTACTGTCTCTGGTTCAGACGCTGCTTCGCTGGCTGTTTACCCGAGTCCAGCCTGCAGAGGGTTTGGGATAAAGTCATCAGCGGCTCCTGTAAGATCCTGGTGTTTGTTGCCATGGAGATTCTGCTCAGCTATAAGATCATGCTGATGGGAATGAATGACCCGGATGGAGTTTACAACTTCCTGTCTAACATGCCGCAGGAGAACACGGACGCCATCGTCACTAAAGCCATCGACCTGTGGCACAAGCACTGCGGGACGCCCATGCACTCTGTCTAATTCATCCTCTCCAGCTGTGTTTGAGAAGCTGCGTACGTCATTCAGGACACGCCTCCCGCTCTCTGAGCCAATAGCAGCAGCGGAAGAGAGACCGGAAACAGAAACGCATCAATcttgcgtgcgtgcgtgtgtgtgtgtgtgtgtgcgtgcatgtgtcaTTTTACACccttatgtcgttccaaacctgtacgagtTCATATGTAAGATCAGGAAAAGTGCTTCAAGTCTCAAAaatcagggggaaaaaaaatggcatgtaGGCTTGGAACAAATGAAGGTGATAAAGTCagattttctatatatatatatatatatatatatatatata
>XM_043218714.1
CTTCACATCGGCGATCATGGCTGATGATCCTCAGAGGAACTTTCGCTCGGCGTATTATGAGAAAGTGGGTTTCAGAGGAGTGGAGGAGAAGAAATCGCTTGAGATCCTGCTGAAGGACAATCCTCTGGATGTGGAGAAGCTGAGCACCTTCAGTCAGAGGTTTCCGCTGCCCTCCATGTACCGGATACACGTGTGGAAAGTCCTGCTGGGCATCCTGCCGCCCCACACGGACTCTCACGCGCTGGTGTCTCGCTATCGGCTCGAGCAGTTCGAGGACGTGAGCGGCGCTCTGACGGCCATGCGCTTCGTCCACGCCTCCACCCCGGCCACGGAGCTCTACCTGCGCATGTACCAGCTGGAGAGCAGACAGCTGCCCCGCAGGAGCGAGCTCAGGCCGCCGGTGAGGAGCTACGGGATTGATGATGAGGATGAAAACTTCCTGTCTATCAGCAGAGCGATGGAGGAGATCGTCGAGGACCCGGTCGACTGCTACTGGCTCGTCAGGTGCTTCGTCAACCAGTTCAAGATCAAGTTTGGAGACTCCGTCCCTCACCTGCCGAAGAGTTTGGAGCACTTCCTGTCTCAGGAGGACGCAGCTCTTCTGGCTCATCTGAAGGTGTCCGGCGCCCTGCACTCGCTGCCGTACTGTCTCTGGTTCAGACGCTGCTTCGCTGGCTGTTTACCCGAGTCCAGCCTGCAGAGGGTTTGGGATAAAGTCATCAGCGGCTCCTGTAAGATCCTGGTGTTTGTTGCCATGGAGATTCTGCTCAGCTATAAGATCATGCTGATGGGAATGAATGACCCGGATGGAGTTTACAACTTCCTGTCTAACATGCCGCAGGAGAACACGGACGCCATCGTCACTAAAGCCATCGACCTGTGGCACAAGCACTGCGGGACGCCCATGCACTCTGTCTAATTCATCCTCTCCAGCTGTGTTTGAGAAGCTGCGTACGTCATTCAGGACACGCCTCCCGCTCTCTGAGCCAATAGCAGCAGCGGAAGAGAGACCGGAAACAGAAACGCATCAATcttgcgtgcgtgcgtgtgtgtgtgtgtgtgtgcgtgcatgtgtcaTTTTACACccttatgtcgttccaaacctgtacgagtTCATATGTAAGATCAGGAAAAGTGCTTCAAGTCTCAAAaatcagggggaaaaaaaatggcatgtaGGCTTGGAACAAATGAAGGTGATAAAGTCagattttctatatatatatatatatatatatatatatatatatata

Function

symbol description
tbc1d7 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; negative regulation of TOR signaling; and response to growth factor. Predicted to be located in cytoplasmic vesicle. Orthologous to human TBC1D7 (TBC1 domain family member 7).

NR:

description
TBC1 domain family member 7-like isoform X1

GO:

id name namespace
GO:0070848 response to growth factor biological_process
GO:0032007 negative regulation of TOR signaling biological_process

KEGG:

id description
K20396 TBC1D7; TBC1 domain family member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043218712.1 True 1438 mRNA 0.53 8 25076490 25085331
XM_043218713.1 False 1415 mRNA 0.53 8 25076494 25085330
XM_043218714.1 False 1253 mRNA 0.53 7 25076488 25084576

Neighbor

gene id symbol gene type direction distance location
c20h8orf82 LOC107669429,LOC107728113,LOC107704038,LOC107567028,LOC107739166 coding downstream 209310 24865459 ~ 24867178 (-)
naprt naprt,LOC107704039,LOC107669423 coding downstream 214648 24852469 ~ 24861840 (-)
hlx1 hlx,hlx1,LOC107704027,LOC107567024,LOC107739182,LOC107728099 coding downstream 243498 24829849 ~ 24832990 (-)
mia3 mia3,LOC107739181,LOC107568205 coding downstream 355382 24699172 ~ 24721106 (-)
brox brox,LOC107710643,LOC107732498,LOC107704042,LOC107568230 coding downstream 385399 24682627 ~ 24691089 (-)
wu:fi04e12 LOC107739175,LOC107672942,LOC107567016,LOC107661358,LOC107728115 coding upstream 839 25086170 ~ 25102714 (-)
LOC122325515 LOC107739175,LOC107661358,LOC107728115,LOC107672942,LOC107567016 coding upstream 18907 25104238 ~ 25116679 (-)
psmg4 LOC107671085,LOC107661364,LOC107739191,LOC107728114,LOC107572584 coding upstream 62811 25148142 ~ 25150522 (-)
bphl bphl coding upstream 65881 25151212 ~ 25153120 (-)
LOC122325043 LOC107671087,LOC107728123,LOC107661362,LOC107556999 coding upstream 83787 25169118 ~ 25189520 (-)
G141920 phactr1,LOC107739173,LOC107655832,LOC107557022 non-coding downstream 16567 25054807 ~ 25059921 (-)
G141936 NA non-coding downstream 24581 25046771 ~ 25051907 (-)
G141931 NA non-coding downstream 34230 25039692 ~ 25042258 (-)
G141911 NA non-coding downstream 53557 25018694 ~ 25022931 (-)
G141908 NA non-coding downstream 110935 24961254 ~ 24965553 (-)
G141951 NA non-coding upstream 79907 25165238 ~ 25168599 (-)
G141966 NA non-coding upstream 133198 25218529 ~ 25305703 (-)
G141972 NA non-coding upstream 191813 25277144 ~ 25325809 (-)
G141974 NA non-coding upstream 194396 25279727 ~ 25335044 (-)
G141979 NA non-coding upstream 207971 25293302 ~ 25294448 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 224709 24838652 ~ 24851779 (-)
G141651 NA other downstream 429067 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 544125 24524069 ~ 24532363 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other downstream 558745 24254393 ~ 24517743 (-)
G141502 NA other downstream 1069823 24004687 ~ 24006665 (-)
mettl24 LOC107738893 other upstream 209513 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other upstream 241177 25326508 ~ 25377416 (-)
G142058 NA other upstream 563161 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 662336 25747667 ~ 25754008 (-)
LOC122324466 samd15 other upstream 965498 26050829 ~ 26054469 (-)

Expression


Co-expression Network