rbmx2 (rbmx2,LOC107692788,LOC107581955,LOC107732309,LOC107697337,LOC107587203)


Basic Information

Item Value
gene id rbmx2
gene name rbmx2,LOC107692788,LOC107581955,LOC107732309,LOC107697337,LOC107587203
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13586310 ~ 13589633 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220814.1
GAAAATAATACCCTGCGAGAACTTCAAAACTCAGTGTAAATATATCCTTCCGGAGTGAGTGCGTCTCATCACAATGAATCCGCTCACCAAAGTAAAACTCATCAATGAGCTGAATGAAAAAGAGGCTCAACTTGATGTCAAAGACACTGTGTCCTGGCATTCAGTCTACAAGGACAGCGCCTGGATCTTTATCGGTGGGCTTCCATATGAGCTGACAGAAGGAGACatcatctgtgttttctctcaGTATGGAGAGATTGCCAACATCAATTTGGTGCGAGATAAAAAGACGGGCAAATCCAAAGGATTCTGCTTCCTGTGCTATGAAGATCAAAGGAGCACCATTCTGGCTGTGGATAACTTCAATGGAATCAAGATTAAGGGCCGAACCATACGTGTGGACCATGTATCAAATTATCGACCACCCAAGGACAATGAAGACATTGATGATGTCACTAAACGTTTGCGAGAAGAAGGATGCGCTCCCAAAGTCCCCCTACCTTCCTCCTCTGAGTCAGAGACTGAGCAAGAATATGCTGTacctgtgaaaaaaacaaaaaaagataaaaaggagaagaaaaaaaagaaaaaggagaagaaagagaagaaaaaagcattaaaggAAGAGAAACATGAGGCACGGACTGAGCCGTCAGCATCATCTCCAATAAGGGtgaagaaggagaaggaggaCACGGCATATGAGAAGTATGCCACGAAAGCACCGGCGGGAAGCAGAAGGGACAGACCAGGACAAGACTTCAGGAACCCACAAGACAGAGCAGATGAGGTGGACAGATTCAGAGATAGGCATGGAGGTGAGAGGGAAAGGGATAGAGAAGAAtacaaaaagacagacagaaacagagaggaTAAAAGACACGAGGACACACGACAGTTAGACAGGgagggagacagagacagaggaagaggtgttgatagagagagaaatgagGATAGAGAGCGAGAACGAGACAGAGAGCGTGAGAGAGAAAGGGAACGTGATAGAGACAGGGAACGAGAGAGAGACCgggatagagaaagagagagagacagaaaggagCGAGACAGGGGAAACGACCGAGGGTTTGCCAAACACAGAGATCACAGTCGTGAAAGAGAACACAGGCGAAATTGAGCAGAGATggtaatttaactttttttgagGGGAACAAAAtggactttttgtttgtttgtgtgcatcagaaatgtaaataaatgtttagcatttttaaacatctgtCTGCATAATTGCTATCTGGCATTACATTACACACAGTACACTCATTTGATAAATAAactcacattttatttgaacataaa

Function

symbol description
rbmx2 Predicted to enable RNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and precatalytic spliceosome. Is expressed in blastodisc and central nervous system. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2).

NR:

description
PREDICTED: RNA-binding motif protein, X-linked 2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13107 RBMX2, IST3; RNA-binding motif protein, X-linked 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220814.1 True 1323 mRNA 0.43 6 13586310 13589633

Neighbor

gene id symbol gene type direction distance location
rab24 rab24,LOC107581958,LOC107697339,LOC107692791,LOC107732326,LOC107707125,LOC107587201 coding downstream 30597 13551299 ~ 13555713 (-)
fgfr4 LOC107732336,LOC107581961,LOC107692784,LOC107707132,LOC107587200,LOC107697367 coding downstream 99480 13475872 ~ 13486830 (-)
uimc1 LOC107732339,LOC107692782,LOC107582006 coding downstream 136790 13440614 ~ 13449520 (-)
LOC122327025 NA coding downstream 141103 13445078 ~ 13445207 (-)
zgc:77151 zgc:77151,LOC107581964,LOC107692781,LOC107707128,LOC107697371,LOC107587198,LOC107732308 coding downstream 150988 13422174 ~ 13435322 (-)
LOC122326187 LOC107732318,LOC107692787,LOC107582024,LOC107726770,LOC107697336,LOC107587205 coding upstream 804 13590437 ~ 13592684 (-)
pou4f4 zgc:158291,LOC107697335,LOC107581947,LOC100711063,LOC107675183,LOC107387148,LOC107587290 coding upstream 106864 13696497 ~ 13699211 (-)
klf8 klf8,LOC107675193,LOC107581946 coding upstream 172842 13762475 ~ 13794530 (-)
cldn2 cldn2,LOC107675184,LOC107738380,LOC107587291,LOC107697356,LOC107582022,LOC107726767 coding upstream 210135 13799768 ~ 13801993 (-)
amot amot,LOC107581942,LOC107675187,LOC107738375,LOC107697351,LOC107587213,LOC107726781 coding upstream 239576 13829209 ~ 13856805 (-)
G146284 NA non-coding downstream 1513 13584454 ~ 13584797 (-)
G146155 NA non-coding downstream 523577 13062086 ~ 13062733 (-)
G146153 NA non-coding downstream 524688 13060420 ~ 13061622 (-)
G146151 NA non-coding downstream 526281 13059731 ~ 13060029 (-)
G146150 NA non-coding downstream 531136 13054953 ~ 13055174 (-)
G146312 NA non-coding upstream 93404 13683037 ~ 13685204 (-)
G146373 NA non-coding upstream 209703 13799336 ~ 13799571 (-)
G146378 LOC107675202,LOC107581945,LOC107587211,LOC107697354,LOC107726795 non-coding upstream 229471 13819104 ~ 13823309 (-)
G146468 NA non-coding upstream 494873 14084506 ~ 14088182 (-)
G146469 LOC107587225,LOC107731971,LOC107704804 non-coding upstream 498629 14088262 ~ 14090520 (-)
LOC122326016 NA other downstream 484789 13100116 ~ 13101521 (-)
G146159 NA other downstream 502816 13083124 ~ 13083494 (-)
LOC122326748 LOC107739910 other downstream 1103146 12482213 ~ 12483164 (-)
G145910 NA other downstream 1210765 12374846 ~ 12375545 (-)
LOC122326615 LOC101885612 other downstream 1424643 12158672 ~ 12161667 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 276782 13866415 ~ 13867643 (-)
LOC122326208 NA other upstream 542621 14132254 ~ 14139158 (-)
dynll2b dynll2a,LOC107554284 other upstream 628974 14218607 ~ 14222690 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other upstream 633510 14223143 ~ 14227266 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other upstream 670052 14259685 ~ 14263667 (-)

Expression


Co-expression Network