cldn2 (cldn2,LOC107675184,LOC107738380,LOC107587291,LOC107697356,LOC107582022,LOC107726767)


Basic Information

Item Value
gene id cldn2
gene name cldn2,LOC107675184,LOC107738380,LOC107587291,LOC107697356,LOC107582022,LOC107726767
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 13799768 ~ 13801993 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220878.1
CTAATATCTACAGAGCAACAGAGATGGTAGGAGCACAAATAGAAGGACTGTGGGAACACAAGAACTACTGGAAACATCTCACCTATTAACATATGTAGTTACTATCAAGCGGAagtatttcctttatttttggaGAACACTTTCATCCAGTGGGCGACATGGCAATAGCAGCGCTGGAGATGATGGGTTTCTTTTTTGGCCTCTTTGGTATGCTTGGGACCTTTGTAGCCACTCTTCTGCCATATTGGGCAACGTCCGCACACGTCGGTCCCAACATCGTGACGGCTGTCATCACCATGAAAGGTCTGTGGATGGAGTGTGTGTACCAGAGCACCGGTGCCTTCCAGTGTGAGACCTACAACACGCTTCTGGGGCTCTCCACTGATCTCCAAGCAGCCAGAGCCATGATGGTCATCTCCTCCATCTTTTCCGTCATGGCCTGCGCGATATCCACCGTCGGTATGCAGTGCACCATCTGCATGGATGGCTCTTCAGTCAAGAGCAAGGTGGCTGGGGTAGGTGGCTCTCTTTTCCTCCTGGCGGGGCTCTTGTCGTTGATCCCTGTGTCTTGGAGGACCCATGAGGTGGTGCAGACCTTCTACATGCAGAACATGCCAGCCAGCTTAAAGTTTGAGATAGGTGACTGCCTGTACGTGGGTTTGGCGTCTTCGCTCTTGTCCATGCTAGGTGGAGGGCTGCTGAGTGCATCCTGTTGTGATGATTTGGACGGGAGCAGAGGAACCAGACGTCATTACCCCTACCCTGACCGCACTGGGCAGCGTGGGCCGTCCCATTTAATGCCCTACCATACATCTACGCTACATTCAAACACAAACCCCAATCTTGCCAACAAGAACCAGACCATTAACAGCCACACCAGCACTAGTTCCCAGTCCACTAGGGCAGCTCAAGATTCCAGGAAATTGGCTCGGCAGAACACAGCGGCCGGGTATGACGTCACAGGCTACGTTTAAGGATTTGTGTTAGTAGTTCTGTACTATTTGTCCTAAAAGCACTCAAGCaatttaatacttttgaaaGATTCCTATAATAGGCGGGAGACTGGATTAAGGCACAAAAAGAATAGACACTCTGCaaatgcattgaattaaatacaatgtGTGGTGCTTTTGGTTTCTCTTTTCAACATACATTGCTGTTCTTCTTCTGaaagtttaaagttttttattaaacagcCAAGATGGGTTTCAATATGGATTGACAGAATCATATGTAAATATGCAAAGCTAATATTTGACATTGACTTTTCAGCTGCCTCATAAAACTTTAATTGCACGAAAAAttgaattgtttttgtattttgcaatgttattgttttttattagtgttttattgttgttgttttgatttgttaaatacagtaatctttattttgttattgaaaTTGTATGCAGTCAGTTTGAGCACTACATGATCGGATTCACTTTCTAAATAAACATGTGAATTGTT

Function

symbol description
cldn2 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in brain; eye; gonad; immune system; and liver. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 29. Orthologous to several human genes including CLDN2 (claudin 2).

NR:

description
claudin-4-like isoform X1

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220878.1 True 1470 mRNA 0.44 2 13799768 13801993

Neighbor

gene id symbol gene type direction distance location
klf8 klf8,LOC107675193,LOC107581946 coding downstream 5238 13762475 ~ 13794530 (-)
pou4f4 zgc:158291,LOC107697335,LOC107581947,LOC100711063,LOC107675183,LOC107387148,LOC107587290 coding downstream 100557 13696497 ~ 13699211 (-)
LOC122326187 LOC107732318,LOC107692787,LOC107582024,LOC107726770,LOC107697336,LOC107587205 coding downstream 207084 13590437 ~ 13592684 (-)
rbmx2 rbmx2,LOC107692788,LOC107581955,LOC107732309,LOC107697337,LOC107587203 coding downstream 210135 13586310 ~ 13589633 (-)
rab24 rab24,LOC107581958,LOC107697339,LOC107692791,LOC107732326,LOC107707125,LOC107587201 coding downstream 244055 13551299 ~ 13555713 (-)
amot amot,LOC107581942,LOC107675187,LOC107738375,LOC107697351,LOC107587213,LOC107726781 coding upstream 27216 13829209 ~ 13856805 (-)
pgk1 pgk1,LOC107675189,LOC107697352 coding upstream 55504 13857497 ~ 13864923 (-)
pgrmc1 pgrmc1,LOC107713219,LOC107581940,LOC107726794,LOC107697348,LOC107675190 coding upstream 67047 13869040 ~ 13870971 (-)
mrps17 mrps17,LOC107713160,LOC107581941,LOC107587217,LOC107697349 coding upstream 74439 13876432 ~ 13877409 (-)
mntb LOC107581939,LOC107675180,LOC107726777,LOC107713217,LOC103362281 coding upstream 142670 13944663 ~ 13961672 (-)
G146373 NA non-coding downstream 197 13799336 ~ 13799571 (-)
G146312 NA non-coding downstream 114564 13683037 ~ 13685204 (-)
G146284 NA non-coding downstream 214971 13584454 ~ 13584797 (-)
G146155 NA non-coding downstream 737035 13062086 ~ 13062733 (-)
G146153 NA non-coding downstream 738146 13060420 ~ 13061622 (-)
G146378 LOC107675202,LOC107581945,LOC107587211,LOC107697354,LOC107726795 non-coding upstream 17111 13819104 ~ 13823309 (-)
G146468 NA non-coding upstream 282513 14084506 ~ 14088182 (-)
G146469 LOC107587225,LOC107731971,LOC107704804 non-coding upstream 286269 14088262 ~ 14090520 (-)
LOC122326919 NA non-coding upstream 311800 14113793 ~ 14115899 (-)
LOC122326813 NA non-coding upstream 322179 14124172 ~ 14125723 (-)
LOC122326016 NA other downstream 698247 13100116 ~ 13101521 (-)
G146159 NA other downstream 716274 13083124 ~ 13083494 (-)
LOC122326748 LOC107739910 other downstream 1316604 12482213 ~ 12483164 (-)
G145910 NA other downstream 1424223 12374846 ~ 12375545 (-)
LOC122326615 LOC101885612 other downstream 1638101 12158672 ~ 12161667 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 64422 13866415 ~ 13867643 (-)
LOC122326208 NA other upstream 330261 14132254 ~ 14139158 (-)
dynll2b dynll2a,LOC107554284 other upstream 416614 14218607 ~ 14222690 (-)
srsf1b srsf1b,LOC107704814,LOC107587230,LOC108278759,LOC108415197,LOC107661749,LOC103029385 other upstream 421150 14223143 ~ 14227266 (-)
G146556 LOC107673793,LOC107693849,LOC107571542,LOC107733475 other upstream 457692 14259685 ~ 14263667 (-)

Expression


Co-expression Network