serpinf1 (serpinf1,LOC107718059)


Basic Information

Item Value
gene id serpinf1
gene name serpinf1,LOC107718059
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12632939 ~ 12638547 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221613.1
AATGTACACATAAGGCctttttctctcaaatattgttcataaatctgtctaaatctgtgttagtgtGAAGTTCTCCTTTGCCAAAATAATCCATTCACCTTACAGGTGTGGcatatcaagatgctgattagaCAGAATGATAATTATACAGGTGTGTCTTAGGCTAGCCACAATAGCAGGCCACTCTAAAATGGGCGGTTTTATCACACAGCACAATACCACAAATATCGCAAGTTTTAAGTGAGCGTGCAATTAAAATGCTGACTGAAGGAATGCTCGCCAGAGCTGTTGCCCGTGAACTGAATGTTCAGTGTATAATTTTGTTCAGCCATTTAATCAATCACTTtttagcgcttttaacaatacagattttaacaaagcactgaacagtgtCAACTaagagaatagagtgatagtaatgtataatgacaagataaagcctttttttttttaatgcagagaTTAATTCGACGATactcgctagaaattaagtgtcgcCAACTGTGCCGGCCAGAGGCGACaacggcaaggaaacaaaaccccatccagaatggagaaaaaaggaaaaaagcctcgggagaaaccaggctcagttcgGGGTCAGTTctcactgtatatttatttaaacatatctGACTACTGAATGCCACAACTAACTAATCAGAATCGAGTACGACATTTAATAAACTTAATGACATTCAATCAACCCAATTATTAAACATGCTGTTTGGTCGAGTAGTAAAGTTTCTTtcttagaatttatttattctaaaaggtgtaacaaattaaaagcccgttatttaaatatgcatccCAGAAAACTGGTGTTTCCGTTCGTAAATAGGTATTTCTATTCGCCTATATTCGTTCTTATTTACTTTCATTCACTAACAAAATGCTTAATTAGTCACGAGAATCAGCAACTAACTCGAACGATCCTTGGGTGAACGGACTTCGATTCACTGAGATGAATCACAGTTCTCACCACTATCTCCTCAAAAGTTATAGACCACCTTCTAGCGTCAGCAAAGGGTGGGATTCCTCACTAAAACACTGTTCGCGCACAGTTGGCGGAGACAGCTGTGAGCTGAAAGTCTGCACGAGACGACGGTAAAGTAGAAAACAGGATGAGGAAGGCAGTTGTGCTCTTTGGTTTATGGACTCTTCTGTCCCTCTCACATGCCCAGTTGACAGATACAGCAGAGCCTGAAGGTGAGGAAGAGGTGGTTGACCTTTTTACTACTCCTCGCACCAAGTTGGCTGCTGCAACCTCTGATTTTGGCTTCAACCTGTTCCGTCAGCTGGCAGCACGTGATCCCAAGGCCAGCGTCTTCCTGTCACCTATAAGTATCTCAGCAGCCTTTACACAGCTTTCAATGGGGGCATCCGAACGGGCCGAGAAACAGATTTACAGGGCCCTCCGCTACCACACCCTGCAAGACAGTCAGCTCCATGACACACTGAGAGACCTTCTATCATCGCTCAGAGCACCTGCCAAGGGCTTCAAGTCAGCAGATCGCATCCTTTTAGCTAGGAaacTTCGTCTCAGGCTGGAATACCTCAACAGTGTAGAGAAACAATATGGGATACGGCCTCAAAGTCTTGCAGGTGGAACCCGGGACCTTAAGACTGTTAATGATTGGTTTAAACAGCAAACTGGTGGAAAAGTGGAACAAGTCGTTCCTTCGATTTCTCGCAACACAGCTTTGTTGCCTGTGGGAGCAGCCTTCTTAAAAGgtaaATGGATAACTAGGTTTAGCAAAGCGAATAAGATGGAGAACTTCCAGAGGGATGGAGAAGCCCCTGCTCTTATTCCCATGATGGAGCAGGAGAATTACCCAGTAAAGATGGGTATTGACTCTGACCTCGGATGCACGATAGCCCAGGTTCCTATGGAGGACGGAATAAGCATGTATTTCTTCTTACCGGATGAGGTGACACAGAATCTAACTCTAATAGAGGAAGCACTTACAGCTGAATTTGTACAGGACCTTTCCAATACCCTCCATGCAGTACAAGTGTTGCTTACACTTCCTGTTATTAAACTCAGCTACAGTAAAGACCTGCTGCCCTCCCTCTCTGACCTAGgtCTGGCTGAATGGTTGGCAGAAATGGGTCTTGTCAAAATTACCAATCAGCCAGTCAAGTTAAATGCTGTCCATCATAAGGTTGTCATGGAAACAGCTCCAGAAGGCGCAAAATATGCTAGCAACACCCCCACTGTCAACGGCCAGTCGCTAGCTCTAACGTACCGCGTAGATCGACCTTTCCTCTTTCTAGTGAGAGATGAGCCATCAGGTGCACTTCTCTTCATTGGGAAAGTGCTGAACCCACGTGACATAGGAAGGGTATGAGACAGACACACTTGCATTAACAAATGAGAGACCAGCGACTTATATATAAGCTCATTTTAAGCCCAAGTCTATAAAcggcaaataaatatttgacataCAAGGCCATTTGGAGAAAAATGACattccatttacattttcagcatacTTATACAGTACAAACTCAAACATGGTATGTGCTCACATTCAAAGTAAAACTATAATTCTGATGATATTGTccatttgtgcttttattagGTATATTTTATGGATAGATTAGTTTACATTTCCTGAATCCTAGCCATACAATTCACATTAGTGTTGATGGATAATAACCTGATGCTCTGACTCATttttcacatgcaaaaaaaatccctCAGGTATTAACAGCTGCTATAATGATTATGGACTGATGGAGTCTCAAAAGCATATTGTAATGGCCACCATCTTTTTGTATAAAACTTCCTTTGAGTGTATGATACATTTGCCATATGGCTTTCATTATCAATCCCTCATAAATGATCAATTTATACTCGTTAAATTCAGTTGATATTCCCATATGTATGTTTAATGCTGATTAcaataaactaaaaagaaagtaaatcagTAACCTA

Function

symbol description
serpinf1 Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of angiogenesis and negative regulation of endopeptidase activity. Predicted to be active in extracellular space. Is expressed in cleithrum; head mesenchyme; notochord; somite; and splanchnocranium. Human ortholog(s) of this gene implicated in several diseases, including brain edema; eye disease (multiple); leukostasis; non-alcoholic steatohepatitis; and osteogenesis imperfecta type 6. Orthologous to human SERPINF1 (serpin family F member 1).

NR:

description
pigment epithelium-derived factor-like

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K19614 SERPINF1, PEDF; pigment epithelium-derived factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221613.1 True 2944 mRNA 0.41 8 12632939 12638547

Neighbor

gene id symbol gene type direction distance location
LOC122326011 NA coding downstream 68409 12559957 ~ 12564530 (-)
LOC122326747 LOC107709744,LOC107574620 coding downstream 75421 12556580 ~ 12557518 (-)
LOC122326755 or115-12,LOC107590131,LOC107757195 coding downstream 89048 12542953 ~ 12543891 (-)
LOC122326756 or115-7,si:ch211-218m3.13,or115-9,LOC108180809 coding downstream 129472 12502529 ~ 12503467 (-)
LOC122326765 or115-9,or115-7,LOC107590109,LOC107655718,LOC107739909 coding downstream 137917 12494084 ~ 12495022 (-)
serpinf2a serpinf2a,LOC107718058,LOC107699948,LOC107599232,LOC107723708,LOC107684202,LOC107588752 coding upstream 148 12638695 ~ 12642836 (-)
slc47a1 slc47a1,LOC107699950,LOC107718054,LOC107571469 coding upstream 103808 12742355 ~ 12762710 (-)
plrdgb plrdgb,pitpnm3,LOC107718051,LOC107571470,LOC108279208 coding upstream 133845 12772392 ~ 12886397 (-)
kif4 kif4,kif4a,LOC107588748,LOC108278814,LOC107758730,LOC107705946 coding upstream 261751 12900298 ~ 12944968 (-)
LOC122326019 LOC107754526 coding upstream 512336 13150883 ~ 13153001 (-)
G145945 NA non-coding downstream 125597 12507072 ~ 12507342 (-)
LOC122326778 NA non-coding downstream 174669 12456008 ~ 12458270 (-)
G145940 NA non-coding downstream 180284 12452100 ~ 12452655 (-)
G145922 NA non-coding downstream 214435 12418157 ~ 12418504 (-)
G145913 NA non-coding downstream 221506 12411167 ~ 12411433 (-)
LOC122326203 NA non-coding upstream 5980 12644527 ~ 12653182 (-)
G146006 NA non-coding upstream 45100 12683647 ~ 12683880 (-)
G146014 NA non-coding upstream 60453 12699000 ~ 12699280 (-)
LOC122326459 NA non-coding upstream 91639 12730186 ~ 12739267 (-)
G146064 NA non-coding upstream 182793 12821340 ~ 12844440 (-)
LOC122326748 LOC107739910 other downstream 149775 12482213 ~ 12483164 (-)
G145910 NA other downstream 257394 12374846 ~ 12375545 (-)
LOC122326615 LOC101885612 other downstream 471272 12158672 ~ 12161667 (-)
rgs14b LOC107721394,LOC107590127,LOC107689186,LOC107748103,LOC107588771 other downstream 575332 12012211 ~ 12057607 (-)
cnot6a cnot6a,LOC107756798,LOC107689185,LOC107590062,LOC107566218,LOC107749911,LOC108441023,LOC107667594 other downstream 647867 11972216 ~ 11985072 (-)
G146159 NA other upstream 444577 13083124 ~ 13083494 (-)
LOC122326016 NA other upstream 461569 13100116 ~ 13101521 (-)
LOC122326201 cox7b,LOC107713147,LOC107582003,LOC107675192,LOC107697350,LOC107726769,LOC107598778 other upstream 1227868 13866415 ~ 13867643 (-)
LOC122326208 NA other upstream 1493707 14132254 ~ 14139158 (-)
dynll2b dynll2a,LOC107554284 other upstream 1580060 14218607 ~ 14222690 (-)

Expression


Co-expression Network