RNA id: XM_043221613.1


Basic Information

Item Value
RNA id XM_043221613.1
length 2944
RNA type mRNA
GC content 0.41
exon number 8
gene id serpinf1
representative True

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12632939 ~ 12638547 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTACACATAAGGCctttttctctcaaatattgttcataaatctgtctaaatctgtgttagtgtGAAGTTCTCCTTTGCCAAAATAATCCATTCACCTTACAGGTGTGGcatatcaagatgctgattagaCAGAATGATAATTATACAGGTGTGTCTTAGGCTAGCCACAATAGCAGGCCACTCTAAAATGGGCGGTTTTATCACACAGCACAATACCACAAATATCGCAAGTTTTAAGTGAGCGTGCAATTAAAATGCTGACTGAAGGAATGCTCGCCAGAGCTGTTGCCCGTGAACTGAATGTTCAGTGTATAATTTTGTTCAGCCATTTAATCAATCACTTtttagcgcttttaacaatacagattttaacaaagcactgaacagtgtCAACTaagagaatagagtgatagtaatgtataatgacaagataaagcctttttttttttaatgcagagaTTAATTCGACGATactcgctagaaattaagtgtcgcCAACTGTGCCGGCCAGAGGCGACaacggcaaggaaacaaaaccccatccagaatggagaaaaaaggaaaaaagcctcgggagaaaccaggctcagttcgGGGTCAGTTctcactgtatatttatttaaacatatctGACTACTGAATGCCACAACTAACTAATCAGAATCGAGTACGACATTTAATAAACTTAATGACATTCAATCAACCCAATTATTAAACATGCTGTTTGGTCGAGTAGTAAAGTTTCTTtcttagaatttatttattctaaaaggtgtaacaaattaaaagcccgttatttaaatatgcatccCAGAAAACTGGTGTTTCCGTTCGTAAATAGGTATTTCTATTCGCCTATATTCGTTCTTATTTACTTTCATTCACTAACAAAATGCTTAATTAGTCACGAGAATCAGCAACTAACTCGAACGATCCTTGGGTGAACGGACTTCGATTCACTGAGATGAATCACAGTTCTCACCACTATCTCCTCAAAAGTTATAGACCACCTTCTAGCGTCAGCAAAGGGTGGGATTCCTCACTAAAACACTGTTCGCGCACAGTTGGCGGAGACAGCTGTGAGCTGAAAGTCTGCACGAGACGACGGTAAAGTAGAAAACAGGATGAGGAAGGCAGTTGTGCTCTTTGGTTTATGGACTCTTCTGTCCCTCTCACATGCCCAGTTGACAGATACAGCAGAGCCTGAAGGTGAGGAAGAGGTGGTTGACCTTTTTACTACTCCTCGCACCAAGTTGGCTGCTGCAACCTCTGATTTTGGCTTCAACCTGTTCCGTCAGCTGGCAGCACGTGATCCCAAGGCCAGCGTCTTCCTGTCACCTATAAGTATCTCAGCAGCCTTTACACAGCTTTCAATGGGGGCATCCGAACGGGCCGAGAAACAGATTTACAGGGCCCTCCGCTACCACACCCTGCAAGACAGTCAGCTCCATGACACACTGAGAGACCTTCTATCATCGCTCAGAGCACCTGCCAAGGGCTTCAAGTCAGCAGATCGCATCCTTTTAGCTAGGAaacTTCGTCTCAGGCTGGAATACCTCAACAGTGTAGAGAAACAATATGGGATACGGCCTCAAAGTCTTGCAGGTGGAACCCGGGACCTTAAGACTGTTAATGATTGGTTTAAACAGCAAACTGGTGGAAAAGTGGAACAAGTCGTTCCTTCGATTTCTCGCAACACAGCTTTGTTGCCTGTGGGAGCAGCCTTCTTAAAAGgtaaATGGATAACTAGGTTTAGCAAAGCGAATAAGATGGAGAACTTCCAGAGGGATGGAGAAGCCCCTGCTCTTATTCCCATGATGGAGCAGGAGAATTACCCAGTAAAGATGGGTATTGACTCTGACCTCGGATGCACGATAGCCCAGGTTCCTATGGAGGACGGAATAAGCATGTATTTCTTCTTACCGGATGAGGTGACACAGAATCTAACTCTAATAGAGGAAGCACTTACAGCTGAATTTGTACAGGACCTTTCCAATACCCTCCATGCAGTACAAGTGTTGCTTACACTTCCTGTTATTAAACTCAGCTACAGTAAAGACCTGCTGCCCTCCCTCTCTGACCTAGgtCTGGCTGAATGGTTGGCAGAAATGGGTCTTGTCAAAATTACCAATCAGCCAGTCAAGTTAAATGCTGTCCATCATAAGGTTGTCATGGAAACAGCTCCAGAAGGCGCAAAATATGCTAGCAACACCCCCACTGTCAACGGCCAGTCGCTAGCTCTAACGTACCGCGTAGATCGACCTTTCCTCTTTCTAGTGAGAGATGAGCCATCAGGTGCACTTCTCTTCATTGGGAAAGTGCTGAACCCACGTGACATAGGAAGGGTATGAGACAGACACACTTGCATTAACAAATGAGAGACCAGCGACTTATATATAAGCTCATTTTAAGCCCAAGTCTATAAAcggcaaataaatatttgacataCAAGGCCATTTGGAGAAAAATGACattccatttacattttcagcatacTTATACAGTACAAACTCAAACATGGTATGTGCTCACATTCAAAGTAAAACTATAATTCTGATGATATTGTccatttgtgcttttattagGTATATTTTATGGATAGATTAGTTTACATTTCCTGAATCCTAGCCATACAATTCACATTAGTGTTGATGGATAATAACCTGATGCTCTGACTCATttttcacatgcaaaaaaaatccctCAGGTATTAACAGCTGCTATAATGATTATGGACTGATGGAGTCTCAAAAGCATATTGTAATGGCCACCATCTTTTTGTATAAAACTTCCTTTGAGTGTATGATACATTTGCCATATGGCTTTCATTATCAATCCCTCATAAATGATCAATTTATACTCGTTAAATTCAGTTGATATTCCCATATGTATGTTTAATGCTGATTAcaataaactaaaaagaaagtaaatcagTAACCTA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K19614 SERPINF1, PEDF; pigment epithelium-derived factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215588 lncRNA downstream 125597 12507072 ~ 12507342 (-) True G145945
TU215586 lncRNA downstream 150521 12482213 ~ 12482418 (-) False LOC122326748
XR_006247508.1 lncRNA downstream 174669 12456008 ~ 12458270 (-) True LOC122326778
TU215581 lncRNA downstream 180284 12452100 ~ 12452655 (-) True G145940
TU215563 lncRNA downstream 214435 12418157 ~ 12418504 (-) True G145922
TU215645 lncRNA upstream 5980 12644527 ~ 12653182 (-) True LOC122326203
XR_006247439.1 lncRNA upstream 7251 12645798 ~ 12647063 (-) False LOC122326203
TU215655 lncRNA upstream 45100 12683647 ~ 12683880 (-) True G146006
TU215664 lncRNA upstream 60453 12699000 ~ 12699280 (-) True G146014
TU215711 lncRNA upstream 91639 12730186 ~ 12739267 (-) True LOC122326459
XM_043220684.1 mRNA downstream 68409 12559957 ~ 12564530 (-) True LOC122326011
XM_043221882.1 mRNA downstream 75421 12556580 ~ 12557518 (-) True LOC122326747
XM_043221893.1 mRNA downstream 89048 12542953 ~ 12543891 (-) True LOC122326755
XM_043221894.1 mRNA downstream 129472 12502529 ~ 12503467 (-) True LOC122326756
XM_043221904.1 mRNA downstream 137917 12494084 ~ 12495022 (-) True LOC122326765
XM_043221612.1 mRNA upstream 148 12638695 ~ 12642836 (-) False serpinf2a
XM_043221610.1 mRNA upstream 148 12638695 ~ 12642836 (-) True serpinf2a
XM_043221717.1 mRNA upstream 103808 12742355 ~ 12762710 (-) True slc47a1
XM_043221661.1 mRNA upstream 133845 12772392 ~ 12886397 (-) False plrdgb
XM_043221664.1 mRNA upstream 133845 12772392 ~ 12886396 (-) False plrdgb
TU215551 other downstream 257394 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 320067 12312799 ~ 12312872 (-) True LOC122327024
XR_006247556.1 other downstream 320291 12312575 ~ 12312648 (-) True LOC122327023
XR_006247555.1 other downstream 320513 12312353 ~ 12312426 (-) True LOC122327022
XR_006247554.1 other downstream 320736 12312130 ~ 12312203 (-) True LOC122327021
TU215842 other upstream 444577 13083124 ~ 13083494 (-) True G146159
TU215845 other upstream 461643 13100190 ~ 13101076 (-) False LOC122326016
TU215846 other upstream 461643 13100190 ~ 13101243 (-) False LOC122326016
XR_006247558.1 other upstream 806531 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 1227868 13866415 ~ 13867613 (-) True LOC122326201

Expression Profile