RNA id: XM_043221661.1


Basic Information

Item Value
RNA id XM_043221661.1
length 4920
RNA type mRNA
GC content 0.43
exon number 20
gene id plrdgb
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 12772392 ~ 12886397 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCACATACCTTCTCAGCATTATTCATCATGCTCGTCATAGTGCTGAAGCTCGTGTATGCTCGTCAGAGATGCGTTCTTGTGACAGGATAGGCTACTTTCCGATTGATGCGTCATAGTAGTTCTCAGCCTTATCACTTTTGGCGCGATGATTCCGGAGATTTAATTCTGACATCGACTACTAATATAACTGTCCATATATTAGAACAGTGGGCTGCATTTAAATGCCATCTGTTCGGCGTAGCTGTTAACTAATGCTAGGTCACCTGTGCCAAATATGCGTAGACAGCCGGTTTGAGAAAGAGAAATCGAATCAACACTACCGCAGACAGTTACATATACGGATAGGATGGCAAAAGAGACGCGAGtgCCCTCATGGAAACATAGCGCCTCCCACTGGAGACTCCAGAACATCACCCAGGAGTCTGTTGAAAGCTCTGATGAAGAGTTTTTTGATGCTCGGGATGTTATGGAAGGGAAGACAGCTTTACTTCTGGAAATGAGTAAGTGGAACTCTAATGACCTGGTGGAGCAGATTGAAACACTGGGACACCTGGAGCACTCAAGAGAGAGCCTGTACAGGCTGCGACACCCTCGATGTGCGCCACAGAGCAGTGTGGATGGATTGGAAGAGATGGAGAGGAAGTGCAGGACAAAATTGCTTATCCTGGTGATTCATGGAGGTCATATATTGGATTCCGGAGGTGGTGACCCTGGAGGAAAGGCTGGTGACACTGCCACTTTGGCGTCCGTTTTGGAGCGCGTGGCTCGGGCACACTTCCAGGCAGCAGCGGACAGCATGCTGATCAGACTGGTGCCCTGCCCACCTGTGTGTGCTGATGCCTTCTCTTTGGTCTCAAATTTGAATCCATACAGCTATGATGAAACCTGCATGTCTAGCAGTGTGGATCACCTGCCACTGGCTTCCCTTCCCATCCTGGCTATAGCTGCCCCTCATTACCAGAATGCTGTGGCAACAGTCGTTGCTGAGGCCAATCAAGTTTACGAAAAATTCCTTCATTCAGCAGAAGGTGTAGGATTCACAGGACAGGTGTGCCTGGTAGCAGATTGTGTTGGTGGGGTTCTTTGTTTTGATGCCTTGTGTTTCGGTGGTGACAAGGAACACAGAAGCCCTGAGGGTGGCAGCACGAACAACAGTACAGAGAGTCTAAAGgaaAGGCAAGGCGTGGTAAGCTCTCTGAGCCCCACTCTCCAAGGTAGCAAGCGCCTGAGTAAAAGCAACATTGATGTGTCAATCCCATGTGATGTATTGTCTGGAGCCTGCCATCCCCTCATCCGTAAGCAAAGTGACTCGTGTGATGTTGACGTGGCCAGTGGTCAGGGTAAGATTAGAAGTCTGTCGCAGGACGACCAGTGTGGCTCCAGGCAGGCTCTCAATCCAGGCTGCTTTGAGTTTGAAGTGTCAGACTGCTTTCTGCTGGGATGCCCACTGGGGCTGGTGCAAGCAATGAGGAGAACTGTTTTACCTGCCGTTGATGtTATTCAGCTCCAGCCAGCTTGTTCTCAGATTTTTAATCTGTTCTACCCATCTGACCCTTCTGCTTCACGTCTGGAACCTTTACTGCATCCAGCTTTCACACAACTTCCCCCCTTTCCCATTCCTCGTTACCAGCGGTACCCTCTGGGTGATGGAAGCTCCAATCTCATGGTGGACACTGTGCTCAGACGCTTCTCAGACAGCAGTGTTTCTGTAGATGGATTGCCAGAGCAGTGCTGCAGAGGAAGCGTGTCCTGCAGGGGCAGCGATCGAGTTGTTCCACTTGGCCCTGCCCACTCGGATGCTGAGGAGTCTGAAACTACCCCTAGCGGGCCTGTTAGCATCTCACACACACTGCCTCACCTTTTTCACGCATCGTACTGGGAGTCCACGGATGCTGTGGCTTTTATTCTTAGACAAGTAATGCGATGTGACTGTCTGAAGACTGGGGAAGGTGATTGTTTGGATGCTATTCCCATTTCTCCATCAAGCCCCCGTGAGAAGTGGCTTCACAGACGAACACATGTAAAACTACGAAATGTAACGGCAAATCACAGAGTTCATGATGTCATCGTAACAGAAGATGGCCCACAGACACTGGTGGGGCGGTTTATGTATGGCCCTCTTGACATGGTGACCCTAACAGGAGAGAAGGtggatgtgtttttaaagaaccAGCCTGCTTCTGGTCGTTGGTTTCTGTTTGACACTGTGGTGACCAGCAGCAGCGGACGGGTGTCCTACACCATCCCCAGTAACAAAAGACTTGGGGTGGGTATCTACCCCATTAAAATGGTGGTCAGGGGTGATCAGACAAGTGCAGAGGCATTCCTTACAGTGTTGCCACAGGGAATGGAGTGTGTGGTGTTTAGTATTGATGGCTCCTTTGCTGCCAGTGTCTCCCTTATGGGCAGTGATCCCAAAGTTCGCCCTGGAGCTGTGGATGTGGTCAGACACTGGCAGGATCTTGGGTATCTGATCATCTACATTACTGGTCGTCCTGACATGCAGAAACAGAGGGTTGTGTCTTGGCTCTCTCAGCACAACTTCCCTCTGGGCATGGTTTTCTTCTCAGAAGGACTTGTCCATGACCCCTTGCGTCAAAAAACCATTTTTCTGAAGAGTCTAGTAAAAGAGTGTCACATTAAGATCAGTGCAGCGTATGGCTCTATGAAGGACATGTCTGTGTACAGCACATTGGGACTGGCACCTAATCAGATGTACATTGTAGGCAGGCCATCCAAGAAACATCAGCATCAGTGCCAGTTTCTGAGCGAAGGCTATGCAGCTCACCTCTCCATTCTTGAGTTTGAGCATGGCTCACGCTCCAAAAAAAACCGAATGGTGCTTCGTCAGGGATCTTTTGGCCTTTCTTCCAAAACAGACTTCCTATCTCCATCCCCGGACTTCCTATCCTGCAAGCGTACTCCACTGCTGTGTCGAGCAATGTCTGTTCAGCAGCCATCACCGCCTTCATCATCTGCCTCCACTCCCAAACCTGAGCGTGCTCAGAGCCAGCCTGAATCTCATAAAGACGGACCAGAGATTCGCATCCAGACTGATGATcaagatgaagaggaagaagaggaagggAGAATACAGGATGTTGTACTGTAAAGGAACTCCATGAGTTGTGAAGAAATGCACACACAGAAGAAGTCAATTTTCAAACACATTCCAATCTCCCTTATCAAACCAGAAGACCTTTTGTTCATATGATCAAACTCAATAGATGGGGTCCACGGTAGACAAGACCACAAGGCCACAAGGACTTGCACATTAcctccaaaacaaaacataacccTGGTCCAAGACCAGCAACATTAAAGACTGGACTGAAATTAACAACACCCTGTGACTCTTATAGATGTCATAATCGAGACGTCCTCCTTTGACAGGCGACTCATTTCATGTGTGGTGAAGGTTTGTCAGACTCCTGtaatggtattttattttattagttttttgaaTTTGTGCCTGCATGTTTTGCTGAACCCAGATTCTTTTTGGCAAAATGTTGCTACATACCCATTCATTATATAAGTACTATAGCTCCAGTGTCTTCTAGGGTGCCGTATGTAGATTATAGATTATGTACTGACAGTCTTTAAACATGTTCTTCTGTGATTTTACATCTGTGGCATTTTCAGAGAATATGTTCTGTGAATATGATTGTATTGCACAAAAactgtatataattgtatacaTGTTTTCTTAGTGATATTAGATGTTATAAAACTATGCTTATATGGTGAAATGTGCTATTTCAGAgcataaagcatttattttactcattttaagaACAACAATTCCCAAGGAGTACACAAATTAACAGAATCAAGGGAACttctttattaataaagcagagattttaatatattaaataaatatatgtaaagaGCTTAAGGCTTTTATAGTACCCACCTAAGGATTATTAGGATatggcaacatttaaaaaaaaaaaaaaatctaaatattgacaaaatcTCAATTGAAGTtgccaaatgaagttcttagctaTGCAAATTACTTTTGGcatacttatgactggttttgtggtttagGGTTACTAATGTctaaacatttactttaattgttttactttttttttgtaaaagtctTGTTTTATGACACACATAATTTAtcaaaatgaagtcaaaaaataatttatcaaaatgaataaaataagaatgaatATGTTGtgttaaataatttcattagaTTCACAAACAAGTTTTCAGTATTggttcttgttttaagcatataGAATAACTAGCTTTATTCAATAActtaatttttctttcatcaaCATGTTGAACCTGCATGAccaactgaagaaaaaaaactcatctcCTTGATTcctattaaaatgactttgtctttgttaattttttattacaattattatggCTGGTCctgtatcattaaaaaaaaacaacttttcatttaaatgtaaacaaaattcaatatttttattaagtataaaaaaagcaaacaattccgctgtttttgtccttttctaAACAATTCACATGCATGATGCAAAGCAATACATGTAAACATTGTAAGTTTGAAACAAGCTCAAATGCATATGACAGTTTTTTAGACAAACTCTCACATTTGGTAATGTTCACATATGGATCACACTATACTATAAGTACAATTGATGACTATAGtgtcttaatatttaaatggtGAATTTGTGAAAATATGGCATACTCAGCATTTAGTTCTCCCTTAACACAAATAAGAGTAAATACAGTTTACAGTAAACTCCATAAAGTACCAAAGTAGTAAAATACTGCTAATAAACTTCAACTAAATAGGTTAGATAGTTAATAAgcataataatattagtaacaTATACCACAGTCAGTATCTATGTCAGTGTAGTGTTGGatggatattaaaaaaataaaaactc

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215711 lncRNA downstream 33125 12730186 ~ 12739267 (-) True LOC122326459
XR_006247480.1 lncRNA downstream 36090 12730969 ~ 12736302 (-) False LOC122326459
TU215664 lncRNA downstream 73112 12699000 ~ 12699280 (-) True G146014
TU215655 lncRNA downstream 88512 12683647 ~ 12683880 (-) True G146006
TU215645 lncRNA downstream 119210 12644527 ~ 12653182 (-) True LOC122326203
TU215769 lncRNA upstream 87544 12973941 ~ 12975389 (-) True G146100
TU215799 lncRNA upstream 134072 13020469 ~ 13020691 (-) True G146124
TU215803 lncRNA upstream 137037 13023434 ~ 13023746 (-) True G146128
TU215807 lncRNA upstream 144533 13030930 ~ 13031150 (-) True G146132
TU215822 lncRNA upstream 154742 13041139 ~ 13041843 (-) True G146139
XM_043221717.1 mRNA downstream 9682 12742355 ~ 12762710 (-) True slc47a1
XM_043221612.1 mRNA downstream 129556 12638695 ~ 12642836 (-) False serpinf2a
XM_043221610.1 mRNA downstream 129556 12638695 ~ 12642836 (-) True serpinf2a
XM_043221613.1 mRNA downstream 133845 12632939 ~ 12638547 (-) True serpinf1
XM_043220684.1 mRNA downstream 207862 12559957 ~ 12564530 (-) True LOC122326011
XM_043222043.1 mRNA upstream 13901 12900298 ~ 12944968 (-) False kif4
XM_043222044.1 mRNA upstream 13901 12900298 ~ 12944968 (-) False kif4
XM_043222042.1 mRNA upstream 13901 12900298 ~ 12944968 (-) True kif4
XM_043220690.1 mRNA upstream 213719 13100116 ~ 13101521 (-) True LOC122326016
XM_043220693.1 mRNA upstream 264486 13150883 ~ 13153001 (-) True LOC122326019
TU215551 other downstream 396847 12374846 ~ 12375545 (-) True G145910
XR_006247557.1 other downstream 459520 12312799 ~ 12312872 (-) True LOC122327024
XR_006247556.1 other downstream 459744 12312575 ~ 12312648 (-) True LOC122327023
XR_006247555.1 other downstream 459966 12312353 ~ 12312426 (-) True LOC122327022
XR_006247554.1 other downstream 460189 12312130 ~ 12312203 (-) True LOC122327021
TU215842 other upstream 196727 13083124 ~ 13083494 (-) True G146159
TU215845 other upstream 213793 13100190 ~ 13101076 (-) False LOC122326016
TU215846 other upstream 213793 13100190 ~ 13101243 (-) False LOC122326016
XR_006247558.1 other upstream 558681 13445078 ~ 13445207 (-) True LOC122327025
TU216130 other upstream 980018 13866415 ~ 13867613 (-) True LOC122326201

Expression Profile