ftcd (ftcd,LOC107754243)


Basic Information

Item Value
gene id ftcd
gene name ftcd,LOC107754243
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6798096 ~ 6804994 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223043.1
AAGTCTGAACAATGTTTGTTGGGAAAGCCTCCCCAAAAGAGGTTATCTATGAAAACAGGAGAATCATTGCCAAATGACCTAAATCCAGTCCGCAGAGGACAGGTTAATTATTCAAAAGATATGTTTGCCGACGCTTTATATGGCTCCCCGTTTGGGAACCAAGGTAGTCGGTAGACAAGTGTGTATGaggaaagtgtgtgttttctcacaGTCATGGCTAAGCTGGTGGAATGTGTACCAAATTTCTCCGAGGGGCGTAACAAGGAGGTCATTGACGCCATAGCCGACGCCATCTCCGCCACAGAGGGCTGCAGCTTGCTGGACGTCGACCCAGGGTCTTCCACAAACAGGACGGTGTACACTTTTGTGGGCTCACCCCTCGCTGTGATCGAGGGGGCGCTGAATGCTGCCCGCGCCGCGTTTAAACTCATAGACATGACCAAACACTCAGGCGAACACCCTCGGACGGGTGCAATGGATGTGTGTCCCTTCATACCGGTGCAGAACGTCAGCATGGAGGAGTGTGTGCAGTGTGCCAATGAATTTGGACGGAGATTGTCAGACATGCTCAATGTGCCTGTCTATCTCTACGGAGAGGCAGCTAGAAAAGAGAGCAGAAGGTCGCTTCCCTCTGTCCGTGCAGGGGAATACGAAGCATTACCGGAGAAGTTAAAAAAGACCGAATGGGTCCCTGAATACGGCCCCGCCACCTTCGTGCCTTCTTGGGGCGCCACAGTCACTGGCGCCCGAAAGTTTCTCGTCGCCTACAACGTGAACCTTCTGAGCACTAAGGAACAGGCTCACAGGATCGCACTGGATATCAGAGAACAGGGCCGTGGGAAAGATCAGCCTGGGCTCCTGAGAAAGGTTCAGGGAATGGGATGGTACCTGGAAGAGGCCAACCTCGCTCAGGTGTCCACCAACATCCTGGACTTTGAGGTGACGCCCATGCACACGGTGTATGAGGAGATCTGTAAGGATGCCAAGGATTTGACTCTTCCAGTGGTGGGGTCTCAGATAGTCGGGCTGATTCCTCTGAAGGCGATGCTGGACTGTGCAGACTTCTACATccaaaaagaaaagctttttgttGTTGAAGAGGAGCACAAAATCCGACTGGTTATCAGTAAACTGGGACTCGACTCTTTGGGGCCATTTGTTCCAAAAGAGAGAATTATAGAGTATATGGTACGGGACAATCAGAACGATGGCCGGCTTGTGTCTCTTTCTCTACACAAGTTTGTCCAGAGTGTTGGGGCCAGAACAGCGGCTCCTGGTGGAGGGTCTGTTTCTGCTGCAGTCGCTGCTATGGGTGCAGCTCTGGGCTGCATGGTGGGTCAGATGACATACGGCAAGAGGCAGTTTGAGTCTCTGGATGAGGAGATGAGGAAACTTATTCCTCCATTTCATGAAGCCATGAATGACTTATTATTAAAAGTGGACGCTGATTCATCAGCTTTTAACAGCTACATGGCTGCTCTGAAATTGCCCAAAGGCACTCCTGACGAAATCAAAAGGAGGGAGGAAGCCATGCAAGAGGGTTTAAAAGCAGCGGTGGGCGTCCCTCTGTCTCTGGCACAGAGAATAAACACACTGTGGCCTGTTCTCAAAGAGATGGTGCGATACGGAAATGTGGCTTGTAAATCAGACATACAGGTAGCGGCGAAAGCTTTGGAAACGGCAGTGTTCGGGGCGTATTACAGCGTTATTATAAACCTGAAGGACATCACGGATGTTTCATTCAGGACTGTCACTGAATCGAAAGTGTCTGCGCTGTTAAAGAACGCCAGAGAGAATGCTAACATAGCTTTGGAGATGGCCGACCAGAGAAAATGATGTACACTGAAAATCAATGCAACCCACTaggGGAGAAGGCCATAGAAACAACTTTTCAACAAGCTGGCAaccatccaaaatatcttaggACAATAGCAGGAAGGATCGCACAGACAAGCACCGCTCAGATTTCAGCAGACAATGTAGAAATACTTTTCTTGCCACTTCCATGTAACTAATTTAAAGTATGTGACAATGTAATCAATTACGTTTTTGTGATGTAAGACTCTCTAGGTATGCAAAAGAGCCTGacatatttcaataattaaaaaaaataaatttgtgcTGTTATATTATGAATAAGCAAACTCACCTATTGCTTGAACGCAACGTAGATCTCATAGTTGTAATGATAATAAACATATCAAGTTGTTTTCACTATAACAAGATGTAGAGTAACATGCATCCAATTAACTGAACACATACTCAACAGATTTTTCGTTTCCAAATATCTCATTAAAACACAGCTTTATTCTCCGTTC

Function

symbol description
ftcd Predicted to enable folic acid binding activity; formimidoyltetrahydrofolate cyclodeaminase activity; and transferase activity. Predicted to be involved in histidine catabolic process to glutamate and formamide; histidine catabolic process to glutamate and formate; and tetrahydrofolate interconversion. Predicted to act upstream of or within histidine metabolic process. Located in Golgi apparatus. Is expressed in liver; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in glutamate formiminotransferase deficiency. Orthologous to human FTCD (formimidoyltransferase cyclodeaminase).

NR:

description
PREDICTED: formimidoyltransferase-cyclodeaminase

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005542 folic acid binding molecular_function

KEGG:

id description
K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223043.1 True 2318 mRNA 0.47 15 6798096 6804994

Neighbor

gene id symbol gene type direction distance location
mmadhca zgc:92335,LOC107739332,LOC107754238,LOC107653595,LOC107600946,LOC107586989 coding upstream 82319 6710916 ~ 6715777 (+)
rnd3a rnd3a,LOC107600972,LOC107710934,LOC107653593,LOC107586959,LOC107687879,LOC108425727 coding upstream 149085 6638212 ~ 6649011 (+)
LOC122327191 r3hdm1,LOC107586957,LOC107739334,LOC107593074 coding upstream 179188 6579007 ~ 6618908 (+)
mgat5 mgat5,LOC107745986,LOC107739338,LOC107663499,LOC107653587 coding upstream 325375 6419658 ~ 6472721 (+)
mrasb mras,rasm,LOC107663675,LOC107587007,LOC107653555,LOC107593037,LOC108425734 coding upstream 412831 6377692 ~ 6385265 (+)
mstna LOC107586967,LOC107754254,LOC107687894,LOC107739355,LOC107653561 coding downstream 141 6805135 ~ 6810639 (+)
stat1a LOC107754245,LOC107687870,LOC107600977,LOC107739326 coding downstream 6792 6811786 ~ 6824204 (+)
sh3bp4a sh3bp4a,sh3bp4,LOC107571706,LOC107687864,LOC107751470,LOC107739319,LOC107653607 coding downstream 604348 7409342 ~ 7438669 (+)
arl4ca arl4ca,arl4c,LOC107600967,LOC107739351,LOC105905671,LOC106575223 coding downstream 645753 7450747 ~ 7453436 (+)
aox6 aox6,LOC107600982 coding downstream 672648 7477642 ~ 7491019 (+)
G150378 NA non-coding upstream 63288 6733286 ~ 6734808 (+)
G150300 NA non-coding upstream 432995 6363605 ~ 6365101 (+)
G150296 NA non-coding upstream 444428 6352762 ~ 6353668 (+)
G150294 NA non-coding upstream 448426 6347418 ~ 6349670 (+)
G149949 crygs1,LOC107756035,LOC107586953 non-coding upstream 478055 6319805 ~ 6320041 (+)
G150408 glsa,LOC107586966,LOC107687871,LOC107754246,LOC107653599,LOC107600978,LOC107739327 non-coding downstream 23510 6828504 ~ 6831372 (+)
G150403 NA non-coding downstream 41892 6846886 ~ 6964118 (+)
G150417 NA non-coding downstream 61218 6866212 ~ 6866844 (+)
LOC122327119 NA non-coding downstream 166846 6971840 ~ 6973715 (+)
G150505 NA non-coding downstream 199929 7004923 ~ 7005720 (+)
G150369 NA other upstream 89205 6708488 ~ 6708891 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other upstream 287640 6502914 ~ 6510456 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other upstream 558739 6236117 ~ 6239357 (+)
G149895 NA other upstream 605437 6191647 ~ 6192659 (+)
LOC122327524 NA other upstream 785415 5923907 ~ 6012681 (+)
G150756 NA other downstream 1362455 8167449 ~ 8168272 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other downstream 1809295 8614289 ~ 8617605 (+)
pdzk1ip1 NA other downstream 2085628 8890622 ~ 8892199 (+)
G150940 NA other downstream 2096149 8901143 ~ 8902311 (+)
G150945 NA other downstream 2114285 8919279 ~ 8919780 (+)

Expression


Co-expression Network