G16462


Basic Information

Item Value
gene id G16462
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5222777 ~ 5229585 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18440
TGAACTTCATGAAATGAAGTCTTTGGAGGCATGAACAAAAGTTTGATGAGGTAATAGTTAGAAATGTATTAATGAAAGTGCTTGGTGCATCATCAGTTAACAACAGGCAATACATATCCATGAAAAAATTACAGAATTCAGTCCATGCCAGTTCAGATAAAGGCTTTAACCTAACCTGATCATAACAGATAAACAACATCCGCAACATTTATACTGTTAAATATACAGATTCAAATATTACAAAAGAATCAAGGATGAATTTCAACACACACTTCAACCTACATCTTTACAGTCTCAGTATCTTATCATTGAAGAGTTCACCATGCGTCCTGTTTCTCACAGAAGAATTAGGCATGTATTTGGATTGTTTCTGTGGTCTCTAGAAGCTGCTGAAATGAAGTTCAGATCTGCTCTGATGTGCGTGGTCCTCCTCTCTGGATCTCCTGCATAATGGAGTGGACCACTTCAGATGTAGTGCACCGACCTCCCAAATCAGCTGTCTGAAACCGAGTTTCAGACAAAGTTTTCAGAACTGCCTTTCGTATCATCCTGGCATATGCATGAAGCTTTAAGTGATCCAGCATCACACAGCTGGCCAGCAGTGTGGCCGTGGGGTTTGCAATATTCTTGTTAGCAATGCTTTTTCCAGTGTTTCTAGTGGCGGTCTCAAAAACAGCATAGTCCTTGCCGTAGTTGACTCCTGGTACCAGACCTGGACCTCCAACAAGTCCAGCACACACATTGCTCACCACGTTTCCATAGAGATTCGGCATCACCATCACATCAAACTGCTGGGGCTTAGAGACCATCTGCATGGTGGTATTATCCACAATCATGTCATCAAATGTGATATCAGGATACCCAGCTGCCACCTCTTTACAGCACTGCAGGAAAAGGCCGTCACCAAGCTTCATGATGTTAGCTTTGTGTACTGCCGTGACCTTGCGGCGGCCTTTCTCCCTGGCCAAGTTAAAGGCATACTCAGCGATCCGCAATGAATTCACACGTGTTATGATCTTCAGACACTCCACCACCCCAGGAACATTCTCATGCTCCAAGCTGCTGTATTCTCCTTCAGTGTTCTCCCTAATGATGATAACATCAATGTCTTTGTGGCGGCTTGGGACTCCAGGAAGAGACTGACAGTGCATCACGTTAGCATACAGGTCCAAAGATGTACGAAGCAAATTGTTCCTGGATTTATGAGATGGAGGAAGGTTGTGATTAGTCTCCAAGTTACCCTTAAGTGCTACTCCATTACGTTTGATTGCAGTAACAGCGTTATTGATGTCATCCTCAGAGGAAGCAGCCGAATCCACCCTGACAACCTCAAAGTCCACAGGCACACAGCAGAATCTGAAAAGCTCTCTGACGTGGTTTAGCAGTTCTGGTCCAATACCATCACCAGGGATCAAAGTCACAGTGTGTCTGCCTCCATATTTAGCTGGTGGGGGAGTATATGAGGACTTCTCCCTCTGGCAGCACACTGCAGGGCTTTTTAGGTTTCTTGCCGTGCACTTTAGTCCGGTCCATGGCTGCAGACGCGCTGAGGAGAGGAAGAGTGCTGGTCTGGCAGCTATGGACATTTTGGATTAAGTTCAGCTTGCCGCTCCGACATCAGCAAACAAACCAAAATAAATGCCGCCGCACGCTCTGTTTGAGCCAGCGGTGCTGTTCCACAATCAGCTGACACAAAACTCAAGAGTTAACTTTTATAACCAAACACGCTTTGCCTTTGGCGCGCTCTAGCGTCCATTATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18440 True 1761 TUCP 0.44 12 5222777 5229585

Neighbor

gene id symbol gene type direction distance location
CI01000001_05205733_05220435 FAM120C coding downstream 1162 5204576 ~ 5221615 (-)
CI01000001_05191382_05196348 HSD17B10 coding downstream 26429 5191059 ~ 5196348 (-)
CI01000001_05155976_05158742 NA coding downstream 64035 5155921 ~ 5158742 (-)
CI01000001_05062950_05065565 NA coding downstream 157212 5062297 ~ 5065565 (-)
CI01000001_05017930_05027838 NA coding downstream 194939 5017520 ~ 5027838 (-)
CI01000001_05288832_05293421 SEPHS2, SPS2 coding upstream 57171 5286756 ~ 5293421 (-)
CI01000001_05295894_05308912 SSR4, SSRD, IKBKG coding upstream 65938 5295523 ~ 5308986 (-)
CI01000001_05313109_05313728 NA coding upstream 83471 5313056 ~ 5313728 (-)
CI01000001_05318747_05341451 ARHGAP4B coding upstream 87929 5317514 ~ 5341773 (-)
CI01000001_05355269_05356224 NA coding upstream 125126 5354711 ~ 5357715 (-)
G16459 NA non-coding downstream 33135 5189281 ~ 5189642 (-)
G16400 NA non-coding downstream 144236 5078342 ~ 5078541 (-)
G16390 NA non-coding downstream 163850 5058690 ~ 5058927 (-)
G16388 NA non-coding downstream 168687 5051494 ~ 5054090 (-)
G16381 NA non-coding downstream 233439 4988569 ~ 4989338 (-)
G16461 NA non-coding upstream 2801 5232386 ~ 5251506 (-)
G16497 NA non-coding upstream 121083 5350668 ~ 5350915 (-)
G16509 NA non-coding upstream 184665 5414250 ~ 5414495 (-)
G16512 NA non-coding upstream 189356 5418941 ~ 5419396 (-)
G16514 NA non-coding upstream 230207 5459792 ~ 5460018 (-)
G16332 NA other downstream 264935 4950689 ~ 4957842 (-)
G15736 NA other downstream 421382 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 494570 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 744632 4468209 ~ 4523431 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 823262 4392314 ~ 4399804 (-)
G16664 NA other upstream 1114519 6344104 ~ 6347955 (-)
G16753 NA other upstream 1354895 6583054 ~ 6615589 (-)
G17789 NA other upstream 1607940 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 1706492 6931621 ~ 6937231 (-)
G17911 NA other upstream 2021726 7251311 ~ 7267952 (-)

Expression


Co-expression Network