Gene
RNA
| Item | Value |
|---|---|
| gene id | G20062 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 10370339 ~ 10377706 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU22529 | True | 7337 | lncRNA | 0.36 | 2 | 10370339 | 10377706 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_10335652_10355677 | DIP2BB, DIP2B, DIP2BA | coding | downstream | 14662 | 10335080 ~ 10355677 (-) |
| CI01000001_10259586_10315835 | SCN8AA, SCN8A, SCN8AB | coding | downstream | 54434 | 10258768 ~ 10315905 (-) |
| CI01000001_10200881_10219844 | NA | coding | downstream | 149962 | 10199787 ~ 10220377 (-) |
| CI01000001_10188558_10190603 | NA | coding | downstream | 178395 | 10188242 ~ 10191944 (-) |
| CI01000001_10153558_10173225 | NA | coding | downstream | 196725 | 10153215 ~ 10173614 (-) |
| CI01000001_10396483_10409163 | ATF7, ATF7A | coding | upstream | 18777 | 10396483 ~ 10409163 (-) |
| CI01000001_10429436_10432248 | ASB8 | coding | upstream | 51239 | 10428945 ~ 10433559 (-) |
| CI01000001_10440005_10457383 | LARP4AA | coding | upstream | 61455 | 10439161 ~ 10457383 (-) |
| CI01000001_10460515_10473374 | PFKMA | coding | upstream | 82258 | 10459964 ~ 10473374 (-) |
| CI01000001_10475281_10484892 | NA | coding | upstream | 97280 | 10474986 ~ 10484892 (-) |
| G20106 | NA | non-coding | downstream | 144962 | 10224882 ~ 10225377 (-) |
| G20089 | NA | non-coding | downstream | 249605 | 10120439 ~ 10120734 (-) |
| G20034 | NA | non-coding | downstream | 304887 | 10034267 ~ 10065452 (-) |
| G20033 | NA | non-coding | downstream | 337309 | 10032769 ~ 10033030 (-) |
| G18803 | NA | non-coding | downstream | 346613 | 10023450 ~ 10023726 (-) |
| G20061 | NA | non-coding | upstream | 929 | 10378635 ~ 10416528 (-) |
| G20068 | NA | non-coding | upstream | 89929 | 10467635 ~ 10518846 (-) |
| G20152 | NA | non-coding | upstream | 153069 | 10530775 ~ 10531128 (-) |
| G20136 | NA | non-coding | upstream | 161321 | 10539027 ~ 10539850 (-) |
| CI01000001_10542497_10550979 | IKZF4 | non-coding | upstream | 162964 | 10540670 ~ 10550979 (-) |
| CI01000001_09804494_09811219 | NA | other | downstream | 549443 | 9804429 ~ 9811219 (-) |
| G18223 | NA | other | downstream | 2441822 | 7926104 ~ 7928517 (-) |
| G18023 | NA | other | downstream | 2612819 | 7756501 ~ 7757520 (-) |
| G17911 | NA | other | downstream | 3117085 | 7251311 ~ 7267952 (-) |
| CI01000001_06932075_06937182 | NA | other | downstream | 3433116 | 6931621 ~ 6937231 (-) |
| CI01000001_10862471_10864514 | NA | other | upstream | 484519 | 10862225 ~ 10865770 (-) |
| G20230 | NA | other | upstream | 644421 | 11022127 ~ 11028777 (-) |
| G20319 | NA | other | upstream | 733131 | 11110837 ~ 11114747 (-) |
| G20315 | NA | other | upstream | 742446 | 11116755 ~ 11120830 (-) |
