CI01000001_10440005_10457383 (LARP4AA)


Basic Information

Item Value
gene id CI01000001_10440005_10457383
gene name LARP4AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10439161 ~ 10457383 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10440005_10457383.mRNA
ACAGCCTGCCGTCAGCCATTGCTCCAACCGGAAGCTGAGCAGATCAACTTCAGAGGATATCAAGAGGTCGCTGAGGAGTGTGGGACGGTGGCGGACTGTGTTAATGTCTGCCTACTCATTAGTAAGCGAACTACTCGATCAGCAAAAAGGGTGAGTCGAGGGGGGCAGGGAGAGACCGACGGAGGCGCGGTGAGCCAGGAGCGGCCGATGAGTTCAGACCAGGGCGGAGAGCCGCAGCTGCAGGAGGAGGCTGAGCCGGGACCAAAAACCCGTAGGGAGGACGAGATCACACCCGGGACCGGGGGAGACTCAGGCGTCATGGTCACTGCGAAAGGAGCTGGTCTGAACCCTAATGCCAAGGTGTGGCAGGAGATTCCTGCAACACAAAATGAAGCTCCTGTGGATGGCACTGTGGCCTCCCCCTGGTCCCAGAACAATACGGCTGAAGATGCCACTATAGGTAAACAGTACACGCCTGGCTTCTCCACTCTCGAGGACAACAGCTCCTCTGGTACTGTAGTAGGTGTGGTGAACGGTATGGACCCCCCTGACCAAAGCTTCCCGGTTTGTGAGAGCACTACAGCAACTAATGTGGAGTCCAAACTCCCCGAGGAACAGCCCGTCTCTGAAGAGACTCTGCGTGAGTCTCTCAAAAAAGAATTGGAGTTCTGTTTCTCCAGGGAGAACTTATCTAAGGATCTTTACCTAATATCTCAAATGGACAGTGACCAGTTTGTCCCCATTTGGACTATTGCCAGCATGGAAGGAATCAAGGTCCTCACAACTGACATGGACCTCATCTTGGATGTCCTGAGATCATCTCCTATGGTCCAAGTTGATGAAAAAGGGGAAAAAGTACGGCCAAATCACAAGCGTTGCATTATCATTCTGCGAGAAGTCCCTGAAACAACACCTGTTGAGGAAGTGGAAGCCTTGTTCAAGAATGACAACTGTCCCAAGGTAATAAGCGTGGAGTTTGCACACAACAACAACTGGTACATTACATTCCAATCAGATACAGACGCTCAACAGGCATATAGATATTTAAGGGAAGAAGTCAAGACATTTCAGGGAAAACCAATCATGGCCAGAATAAAAGCCATCAACACATTCTTTGCGAAGAATGGTTACCGCAACCTGGACTGCAGTGTGTATCCTCAGCAATCTCACACTCAGTCACAGTACAGCTCCCCTCTCTTCATGCAGCCTGTTTACAGCCCCCAGCAGCAGTACCCGCTCTACAGCATAGTACCTCCTACTTGGACGCCATCTCCTACTCCATACTTTGAGACTCCCCTGGCACCTTTTCCCAACAGTGGTTTCGTCAATGGGTTTGGCTCACCTGGACACTACAAAACTGGCTCAAATTCTCTAAACCTTAGCCGTCCCTTCAGCAGGAACCGGAGAGACGGAAGCAAATCTCATGTGGGCTTTTGTTTCTTCTTTTCGAGTAGGAACCACGTGAAGCCTCAGACGAGGGCTAATGATGGACTCTCTTCCACTGTGTCCCCGGTGGCTCTTGTGGATGGACTGTCTGGCCTGCACAGTCCCCAGCCTCCCTCCAGCGGCGGGCCGAGACCAGTTCCCTTGTCTCAAGTGAAGGTACCGCCCCCCAAGTTTGACCTGGCCGCCTCCAACTTCCCTCCACTGCCTGGCTGCTCTGCCAGTCCGCAGGGGGAGCCTGTGCTGGAGAACCGCCTCTCTGATGTTGTACGGGGCCTGAATAGGGAAAAGCAGCAGGATTCAAGCAAAGAGTCCGCTGTGAGTCCCACAGGCCCAGACTCAGAGGAGACCGTCTCCAGGCCCACCCAGCCTGTAGCCAAGATGACTGCTCATGTTCCTGATCCTGTGAACTCCAGCTCCAACCACCTGGAGAAGAAACCGGAGATTGTGGAGCCTCCAGTCTATAAAGAGACGTCTGTGACCTCTGCTCCTGTCGCAGCCGCGCCGCCCACCCCTGCCCCAACAGCACCTGGTCCAAAGCTTCAGCCCAGCTCGGCTACGCCTGCAGCCCCTCAATCTAACACTGCCCCCTCCAGCACCCCGGCACTGGAACCTCGCAAGCTCAGTTACGCTGAAGTGTGTCAGCGACCACCGAAGGATCCCCCTCCTCCAGCATCCACTTCCAGCCCCAACAATGCAAGTGCACAGCCTCTGAGAGAGCTGCGTGTCAACAAGGTGGAGGAGCAGCCCTCCAGCCCTGCAAACAAACAGGATCGGCCTCAGGAAACGGGGGGCAACTGCAAGGCCAGGGAGGGCCGGCCGGCCCGTGACTCCCAGGGCTTTTCTCGCAGCAACGGACCCCCCAGAACCAATACGGGGGGATTCAAGCTACGAGAGCAGCAGAGACGCCCTCCCTTTGGCCATCGTGGTTCCCCCCAAGGAGGTTCCAGACACACTGGAAAAGAGCAGAACATCCCCCCCATATCGCCAAAGTAAAGACTCTGAACAGAAATCCTTAATGTATGAATATTTACACACACATATATATGAGATATATATGTAAATACATATATAAATATATATAAAGAGATGAAATATGATATAAAAGTCAAAATTTAAAATGGTATTCACCTCTCCTGCCTGGAGCACTTCCAGAGGAAAAAGTCTCAAGAAGTGACAATGCACAGACTGGGGTATCCAGGCAAAAATGGGCATCAGAAATTGGAAGCAGTTGTTGCTTGCTGAAGGACGCCATCAAATAGGAAAAAAAAAACATTTTATGCTTCTAACTTGACAATGTCCCTTCAGAATGTAAATCCATGTGAATTTTTTTTTTTTTTCTTCTTGAAACGAGGGTGGCCTCTCGCAGCCCTGCTCGAGAGGTGTGAAAGTGGGCGGTCTGATGGCCCTGATGGTGGTCTGCAAAGAGCATATGCACTAAGAAAAGGAACATGCATAAACGATGTCATGTACCTATACAAAGATCTCACTTTGACATGCAATGATTCATCTTTTTCTTTTCTTTCGTTTTCGGTTGCTTCATTTGCAATCACAGGACACTGGGCGTTCGACCCCTGGGGTAGTTTGACCGTGTAAATGAACATTTCTTTGGAAGGATGTGGTTTGCTTTAGAGTCGATTCATCTGGGAACTAGATCCCGTGTAGAATATGTGGCGCGTGCTTGAGAGTGGATTATTTCGCAAGTATCTTTAGGGCTGACAGTGCGATTTGGTCTGGAGTTTTGCGTTAGTTTGCTTGACATACTGTAGCTCGTGATTAACTCACTAATGGGCACTCGGATTTACTTACGATCAATTTTGGAGCCTTGTTAATGATTAAA

Function

symbol description
larp4aa Predicted to enable RNA binding activity. Orthologous to human LARP4 (La ribonucleoprotein 4).

GO: NA

KEGG:

id description
K18763 LARP4; la-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10440005_10457383.mRNA True 3283 mRNA 0.51 16 10439161 10457383

Neighbor

gene id symbol gene type direction distance location
CI01000001_10429436_10432248 ASB8 coding downstream 5602 10428945 ~ 10433559 (-)
CI01000001_10396483_10409163 ATF7, ATF7A coding downstream 29998 10396483 ~ 10409163 (-)
CI01000001_10335652_10355677 DIP2BB, DIP2B, DIP2BA coding downstream 83484 10335080 ~ 10355677 (-)
CI01000001_10259586_10315835 SCN8AA, SCN8A, SCN8AB coding downstream 123256 10258768 ~ 10315905 (-)
CI01000001_10200881_10219844 NA coding downstream 218784 10199787 ~ 10220377 (-)
CI01000001_10460515_10473374 PFKMA coding upstream 2581 10459964 ~ 10473374 (-)
CI01000001_10475281_10484892 NA coding upstream 17603 10474986 ~ 10484892 (-)
CI01000001_10487487_10496560 PHF8 coding upstream 29842 10487225 ~ 10496560 (-)
CI01000001_10503104_10506678 ARF2B, ARF3A, ARF2A, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF5.L coding upstream 45278 10502661 ~ 10508335 (-)
CI01000001_10513629_10520878 WNT10B coding upstream 56180 10513563 ~ 10521054 (-)
G20061 NA non-coding downstream 22633 10378635 ~ 10416528 (-)
G20062 NA non-coding downstream 61455 10370339 ~ 10377706 (-)
G20106 NA non-coding downstream 213784 10224882 ~ 10225377 (-)
G20089 NA non-coding downstream 318427 10120439 ~ 10120734 (-)
G20034 NA non-coding downstream 373709 10034267 ~ 10065452 (-)
G20068 NA non-coding upstream 10252 10467635 ~ 10518846 (-)
G20152 NA non-coding upstream 73392 10530775 ~ 10531128 (-)
G20136 NA non-coding upstream 81644 10539027 ~ 10539850 (-)
CI01000001_10542497_10550979 IKZF4 non-coding upstream 83287 10540670 ~ 10550979 (-)
G20153 NA non-coding upstream 96625 10554008 ~ 10555307 (-)
CI01000001_09804494_09811219 NA other downstream 618265 9804429 ~ 9811219 (-)
G18223 NA other downstream 2510644 7926104 ~ 7928517 (-)
G18023 NA other downstream 2681641 7756501 ~ 7757520 (-)
G17911 NA other downstream 3185907 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 3501938 6931621 ~ 6937231 (-)
CI01000001_10862471_10864514 NA other upstream 404842 10862225 ~ 10865770 (-)
G20230 NA other upstream 564744 11022127 ~ 11028777 (-)
G20319 NA other upstream 653454 11110837 ~ 11114747 (-)
G20315 NA other upstream 662769 11116755 ~ 11120830 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location