CI01000001_10513629_10520878 (WNT10B)


Basic Information

Item Value
gene id CI01000001_10513629_10520878
gene name WNT10B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10513563 ~ 10521054 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10513629_10520878.mRNA
ACCCTGACGGCGCCCCCTCCTCCTCAGTGACATACACGCTCCGGTCCCAAAGCTTCATCAAATGCTGCCTGCTCAACTCCCCGCTCCTCACACAAACAATTGAAGTCATTTCCAGTTCGTCTTTAAAACGATCCCACAGGTGTTTTAATGTCCCGTCGAGAAAAGCTTTCAGCGCAATGGAGTTACCCGACAGACAGTGTTTGGGAAGAGTCCTGATCGTGACTGCTGCGCTCCTGTCACCTGCGTTCACGGTACTGGGCAATGACATCCTTGGCCTGAAGGTGGCAGGAGAGCCAGTGCTTACCCCCAACGCAGTGTGTTTACGACTGGCAGGCCTGACCAAAAAACAGATGCGTCTGTGTGTGCGCAGCCCTGATGTCACAGCCTCTGCTCTGCAGGGCATTCAGGTTGCTATTCACGAATGCCAACACCAGCTCAGAGACCAGCGCTGGAACTGCTCCTCCTTGGAGAACCATGGCAAGTTGCCCCATCAGAGTGCCATTCTCAACAGGGGTTTCCGAGAGAGCGCCTTCTCGCTGTCGCTGCTGGCTGCAGGTGTCGTGCACTCGGTGGCTTCGGCCTGCAGCCTCGGTAAGTTGCGCGGGTGTGGCTGCGAGGCTAAACGTCACCTGGACGATGACAAAATCCGTCTCAAGTTAACCCAGCTCCAGCTTCAGACTTTTCAGAGGAGTGGAGTGTCCATAGCAGGTGCAGGAGAGAACACACCCGAGTTCGGTTCACTCAACAGCGGCCTGCCGGCCAATCTGCGCTCATCCCACCCCGTCAGTCTCCTCAAACCCTTACCGGATGAGGTCACGACATTACAGGACACCTGGGAGTGGGGAGGCTGTAGTCACGATGTTCGTTTTGGCGTACGGTTCTCTAGGGATTGGTTGGATTCCAGAGGATCTCCTCGCGATATACACGCTCGTATGCGGATTCATAATAATAGAGTGGGCAGACAGGTAGTCACTGACAACATGAGAAGAAAGTGCAAGTGCCATGGCACATCAGGCAGCTGCCAGTTCAAGACCTGCTGGTATGTTTCTCCTGAATTCCGGCTGGTGGGATCACTGCTACGGGAGAAATTTCTGACCGCCATCTTCATAAACTCTCAGAACAAGAACAGCGGAGTGTTCAACTCTCGAATTGGTGGGAGCACCGGCTCAGATCAGCTCAGAGGCCGGCGACGCAGCATCGCCCGTGAGTTAGTGTACTTCGAGAAGTCCCCTGACTTCTGCGACCGCGAGCCCGCGGTGGATTCGCTAGGCACTCAGGGTCGCATCTGCAACAAGAGCAGCTCCGACATGGACGGCTGCGGGTCGCTGTGCTGCGGCCGCGGACACAACATCCTCAAACAGGCACGCAGCGAACGGTGTAACTGCCGCTTTCACTGGTGCTGCTACGTGCTCTGCGAGGAGTGCAGGGTTTCGGAGTGGGTTAATCTGTCAGAGACTGGACCACTGTGTGATTTCCTAACTAAACACAGGCGCACTTCTGATGTCTACGCTCTGTCTGAGTTCTTTGAGTGCATAACATTCACAAACATCTTAGGAATAAATGAGTTTTTCTGTCTGATTCCACGAGACTCTAATGAGGATGCACTGTGGCGGCTGTCGATTGAGTGAAGTGACCACCCACGGTCCGCTGGCTTTATCGAACTCACTTCTTGTGGTATTTCCTCTGGCAATAAA

Function

symbol description
wnt10b Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within midbrain-hindbrain boundary development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in obesity; split hand-foot malformation 6; and tooth agenesis. Orthologous to human WNT10B (Wnt family member 10B).

GO:

id name namespace
GO:0045165 cell fate commitment biological_process

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10513629_10520878.mRNA True 1694 mRNA 0.54 5 10513563 10521054

Neighbor

gene id symbol gene type direction distance location
CI01000001_10503104_10506678 ARF2B, ARF3A, ARF2A, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF5.L coding downstream 5228 10502661 ~ 10508335 (-)
CI01000001_10487487_10496560 PHF8 coding downstream 17003 10487225 ~ 10496560 (-)
CI01000001_10475281_10484892 NA coding downstream 28671 10474986 ~ 10484892 (-)
CI01000001_10460515_10473374 PFKMA coding downstream 40189 10459964 ~ 10473374 (-)
CI01000001_10440005_10457383 LARP4AA coding downstream 56180 10439161 ~ 10457383 (-)
CI01000001_10542497_10550979 IKZF4 coding upstream 20877 10540670 ~ 10550979 (-)
CI01000001_10556067_10557569 DNAJC22 coding upstream 34950 10556004 ~ 10558535 (-)
CI01000001_10638148_10656332 ACV1B, ACVR1BA, ACVR1BB, ACVR1B coding upstream 117046 10638100 ~ 10657269 (-)
CI01000001_10658398_10672912 ACVRL1 coding upstream 137338 10658392 ~ 10673477 (-)
CI01000001_10676846_10683262 ANKRD33AA coding upstream 155468 10676522 ~ 10684044 (-)
G20061 NA non-coding downstream 97035 10378635 ~ 10416528 (-)
G20062 NA non-coding downstream 135857 10370339 ~ 10377706 (-)
G20106 NA non-coding downstream 288186 10224882 ~ 10225377 (-)
G20089 NA non-coding downstream 392829 10120439 ~ 10120734 (-)
G20034 NA non-coding downstream 448111 10034267 ~ 10065452 (-)
G20152 NA non-coding upstream 9721 10530775 ~ 10531128 (-)
G20136 NA non-coding upstream 17973 10539027 ~ 10539850 (-)
G20153 NA non-coding upstream 32954 10554008 ~ 10555307 (-)
G20156 NA non-coding upstream 40581 10561635 ~ 10561980 (-)
CI01000001_09804494_09811219 NA other downstream 692667 9804429 ~ 9811219 (-)
G18223 NA other downstream 2585046 7926104 ~ 7928517 (-)
G18023 NA other downstream 2756043 7756501 ~ 7757520 (-)
G17911 NA other downstream 3260309 7251311 ~ 7267952 (-)
CI01000001_06932075_06937182 NA other downstream 3576340 6931621 ~ 6937231 (-)
CI01000001_10862471_10864514 NA other upstream 341171 10862225 ~ 10865770 (-)
G20230 NA other upstream 501073 11022127 ~ 11028777 (-)
G20319 NA other upstream 589783 11110837 ~ 11114747 (-)
G20315 NA other upstream 599098 11116755 ~ 11120830 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022411 wnt10b coding NC_007134.7 CM002907.2 27641471 ~ 27647769 (-)