RNA id: CI01000001_10513629_10520878.mRNA


Basic Information

Item Value
RNA id CI01000001_10513629_10520878.mRNA
length 1694
RNA type mRNA
GC content 0.54
exon number 5
gene id CI01000001_10513629_10520878
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10513563 ~ 10521054 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCTGACGGCGCCCCCTCCTCCTCAGTGACATACACGCTCCGGTCCCAAAGCTTCATCAAATGCTGCCTGCTCAACTCCCCGCTCCTCACACAAACAATTGAAGTCATTTCCAGTTCGTCTTTAAAACGATCCCACAGGTGTTTTAATGTCCCGTCGAGAAAAGCTTTCAGCGCAATGGAGTTACCCGACAGACAGTGTTTGGGAAGAGTCCTGATCGTGACTGCTGCGCTCCTGTCACCTGCGTTCACGGTACTGGGCAATGACATCCTTGGCCTGAAGGTGGCAGGAGAGCCAGTGCTTACCCCCAACGCAGTGTGTTTACGACTGGCAGGCCTGACCAAAAAACAGATGCGTCTGTGTGTGCGCAGCCCTGATGTCACAGCCTCTGCTCTGCAGGGCATTCAGGTTGCTATTCACGAATGCCAACACCAGCTCAGAGACCAGCGCTGGAACTGCTCCTCCTTGGAGAACCATGGCAAGTTGCCCCATCAGAGTGCCATTCTCAACAGGGGTTTCCGAGAGAGCGCCTTCTCGCTGTCGCTGCTGGCTGCAGGTGTCGTGCACTCGGTGGCTTCGGCCTGCAGCCTCGGTAAGTTGCGCGGGTGTGGCTGCGAGGCTAAACGTCACCTGGACGATGACAAAATCCGTCTCAAGTTAACCCAGCTCCAGCTTCAGACTTTTCAGAGGAGTGGAGTGTCCATAGCAGGTGCAGGAGAGAACACACCCGAGTTCGGTTCACTCAACAGCGGCCTGCCGGCCAATCTGCGCTCATCCCACCCCGTCAGTCTCCTCAAACCCTTACCGGATGAGGTCACGACATTACAGGACACCTGGGAGTGGGGAGGCTGTAGTCACGATGTTCGTTTTGGCGTACGGTTCTCTAGGGATTGGTTGGATTCCAGAGGATCTCCTCGCGATATACACGCTCGTATGCGGATTCATAATAATAGAGTGGGCAGACAGGTAGTCACTGACAACATGAGAAGAAAGTGCAAGTGCCATGGCACATCAGGCAGCTGCCAGTTCAAGACCTGCTGGTATGTTTCTCCTGAATTCCGGCTGGTGGGATCACTGCTACGGGAGAAATTTCTGACCGCCATCTTCATAAACTCTCAGAACAAGAACAGCGGAGTGTTCAACTCTCGAATTGGTGGGAGCACCGGCTCAGATCAGCTCAGAGGCCGGCGACGCAGCATCGCCCGTGAGTTAGTGTACTTCGAGAAGTCCCCTGACTTCTGCGACCGCGAGCCCGCGGTGGATTCGCTAGGCACTCAGGGTCGCATCTGCAACAAGAGCAGCTCCGACATGGACGGCTGCGGGTCGCTGTGCTGCGGCCGCGGACACAACATCCTCAAACAGGCACGCAGCGAACGGTGTAACTGCCGCTTTCACTGGTGCTGCTACGTGCTCTGCGAGGAGTGCAGGGTTTCGGAGTGGGTTAATCTGTCAGAGACTGGACCACTGTGTGATTTCCTAACTAAACACAGGCGCACTTCTGATGTCTACGCTCTGTCTGAGTTCTTTGAGTGCATAACATTCACAAACATCTTAGGAATAAATGAGTTTTTCTGTCTGATTCCACGAGACTCTAATGAGGATGCACTGTGGCGGCTGTCGATTGAGTGAAGTGACCACCCACGGTCCGCTGGCTTTATCGAACTCACTTCTTGTGGTATTTCCTCTGGCAATAAA

Function

GO:

id name namespace
GO:0045165 cell fate commitment biological_process

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22528 lncRNA downstream 97035 10378635 ~ 10416528 (-) True G20061
TU22529 lncRNA downstream 135857 10370339 ~ 10377706 (-) True G20062
TU22587 lncRNA downstream 288186 10224882 ~ 10225377 (-) True G20106
TU22560 lncRNA downstream 392829 10120439 ~ 10120734 (-) True G20089
TU22495 lncRNA downstream 448111 10034267 ~ 10065452 (-) True G20034
TU22643 lncRNA upstream 9721 10530775 ~ 10531128 (-) True G20152
TU22618 lncRNA upstream 17973 10539027 ~ 10539850 (-) False G20136
TU22629 lncRNA upstream 19616 10540670 ~ 10542122 (-) True CI01000001_10542497_10550979
TU22644 lncRNA upstream 32954 10554008 ~ 10555307 (-) True G20153
TU22647 lncRNA upstream 40581 10561635 ~ 10561980 (-) True G20156
CI01000001_10503104_10506678.mRNA mRNA downstream 5228 10502661 ~ 10508335 (-) True CI01000001_10503104_10506678
CI01000001_10487487_10496560.mRNA mRNA downstream 17003 10487225 ~ 10496560 (-) True CI01000001_10487487_10496560
CI01000001_10475281_10484892.mRNA mRNA downstream 28671 10474986 ~ 10484892 (-) True CI01000001_10475281_10484892
CI01000001_10460515_10473374.mRNA mRNA downstream 40189 10459964 ~ 10473374 (-) True CI01000001_10460515_10473374
CI01000001_10440005_10457383.mRNA mRNA downstream 56180 10439161 ~ 10457383 (-) True CI01000001_10440005_10457383
CI01000001_10542497_10550979.mRNA mRNA upstream 20877 10541931 ~ 10550979 (-) False CI01000001_10542497_10550979
CI01000001_10556067_10557569.mRNA mRNA upstream 34950 10556004 ~ 10558535 (-) True CI01000001_10556067_10557569
CI01000001_10638148_10656332.mRNA mRNA upstream 117046 10638100 ~ 10656704 (-) False CI01000001_10638148_10656332
CI01000001_10658398_10672912.mRNA mRNA upstream 137338 10658392 ~ 10673477 (-) True CI01000001_10658398_10672912
CI01000001_10676846_10683262.mRNA mRNA upstream 155468 10676522 ~ 10684044 (-) False CI01000001_10676846_10683262
TU21059 other downstream 692667 9810938 ~ 9820896 (-) True G18754
TU20485 other downstream 2585046 7926104 ~ 7928517 (-) True G18223
TU20273 other downstream 2756043 7756501 ~ 7757520 (-) True G18023
TU20141 other downstream 3260309 7251311 ~ 7253254 (-) False G17911
TU19985 other downstream 3576340 6936077 ~ 6937223 (-) True CI01000001_06932075_06937182
TU22623 other upstream 17973 10539027 ~ 10539850 (-) True G20136
TU22735 other upstream 341171 10863945 ~ 10863998 (-) True G20234
TU22729 other upstream 501073 11022127 ~ 11028777 (-) False G20230
TU22856 other upstream 589783 11110837 ~ 11114747 (-) True G20319
TU22832 other upstream 599098 11120152 ~ 11120830 (-) True G20315

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044217 True 1515 mRNA 0.54 4 NC_007134.7 27641471 ~ 27647769 (-)