CI01000001_10638148_10656332 (ACV1B, ACVR1BA, ACVR1BB, ACVR1B)


Basic Information

Item Value
gene id CI01000001_10638148_10656332
gene name ACV1B, ACVR1BA, ACVR1BB, ACVR1B
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10638100 ~ 10657269 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10638148_10656332.mRNA
AGAGAAGGCCAAAAGAGCAGATGCTCCACTGATTGATGGATATTTATAAGATGTTTATCTCGTTTTTTTCCCCAAGCCAAAGTTTCCCTGTGTTTGTCTTGCTGTCAGACTGTATGGCGGTGTGAGAGGATGGGCATTGATTTCTGTCTGCCTGTTTATCTATATCAGCGCCCTTGCTATATCCATCTGTGGAGGAGCACAGAGAGGGGGCTTTGCCGGAGATAATTCCCCAACTCTGCCTGTCCGGTCAGATGGAGAGAGGGTTATTTTTAACAGAGCACAGCGGCTGAGTGGAGTATCAATGCCCTGCTCTGGTAGGCCAGACTCCTCTGAAATGGTGCCCTTCTATCAGCTGTGACATTTTTACACAGAATGGACCCATTCCCGATGTCATTGTTTGGAATAATCGGATATAAACGCCCAGCTGAAATATGTCGAATGGGATTTTTTATTGAGGGTCTGAGGTCTCTAAAGCTTAACCCATACTGTTGTTTTCGTGGGAGTCCTGAATGCTGCTCACAGGGGTTCTGTAAGCTCCTTTGGATCACACATGTCACACAATGTGGGTCCTACTCACAAAGTCTCGCTCGCTTGTCAATATCACGCAAAACGAATGCATTAATGCTAAGAGATGGGAATCTTGCAGTCATGCTTCCACGACGAACTGCTGTAGCGCTGCTCGCCCTGTGTGGATTAATAGCGGTCGGCGATGAGTACGATGGGAAGCTAGTCATTCAGCAAGTTCAGACTGAAGTCAGATTTTGGAGTCTGGTCCTTTGTAATGGAAATGCGGGCAATGAGCCCTATTCAGTGGCCTGTCAAGGGAGTCTGCCTTTCTTTTGTATGGCCAAACTGATGGTGGTTACATCCACAGCACAAATAAACATGTCTGTGGTTGCATGGCACAGCACGATAACAGTTTGTGCTTGGAAACACTGCTCCCTGTCTGGGTGCTCAATGGATCTCATTTCAGCTCTATGCATCTTGGGTAACTGCACTCTCTCAGTCTGCCCGCTCTCAGTAGCCCCTGGCATCCTGCTAGAAGAGGAGGATGATGGGCTTTCATTATCCAGAGGAGCTCTTAAGTGTAATTGCACGGCTTGTGAGAACACCGGTTATGTGTGCGAGACTGATGGGGCCTGCATGACCTCTACATACTACATCAATGGTCAGGAGGAGCAGCAAGTACGGATCTGCATCCCCAGTGTCAACCTGGTTCCACCTGGACAGCCCATCTACTGCCTGAGTGCCGAAGGCCTGCTCAACACGCACTGCTGCTACACAGACTTCTGCAACAGCATCAACCTCCAGATTCCCAGCGGGATTCCTGTAGGTAAAGAGGGCAGTTGGGGTCCAGTAGAGCTGGTGGCAGTGATAGCAGGCCCGGTCTTCCTCTTTTGCTTGTTGCTTATCGTGGGATTGCTCGTTTTCCAGTACCACCAACGGAACTATAACCACCGGCAGCGACTTGAAGTTGAGGATCCGTCCTGTGATCATCTGTACTTGGCCAAAGACAAGACCTTACAGGATCTCATCTTTGATCTGTCCACCTCTGGTTCAGGATCTGGTCTGCCCTTGTTTGTTCAGAGGACAGTGGCCAGGACAATTGTATTGCAGGAGATCATAGGTAAAGGTCGCTTTGGGGAAGTATGGAGGGGGAGATGGAGAGGAGGGGATGTGGCTGTGAAGATCTTCTCATCCAGAGAGGAGCGCTCCTGGTTCCGTGAGGCTGAGATTTACCAGACCATCATGCTCCGTCATGAGAACATCTTGGGATTCATTGCTGCTGATAATAAAGACAATGGCACATGGACACAGCTGTGGCTGGTGTCAGACTACCATGAACATGGCTCATTATTTGACTATCTCAACCACTACTCCGTCACAATCGAGGGGATGATTAAGTTATCACTTTCAGCAGCCAGCGGCCTGGCACATCTGCACATGGAGATCCTGGGAACGCAAGGGAAACCAGGCATTGCACATCGTGACCTGAAATCTAAAAACATCCTGGTGAAAAAGAACGGTACTTGTGCCATAGCAGATCTGGGGCTCGCTGTACGGCACGAGTCCATCACTGATACTATAGACATCGCCCCCAATCAGAGGGTTGGCACTAAAAGATATATGGCCCCAGAAGTACTAGATGAAACGATCAACATGAAGCATTTTGATTCTTTTAAGTGTGCTGATATCTACGCTTTGGGACTGGTATACTGGGAGATTGCACGACGGTGTAATGCTGGAGGCATCCATGAAGATTACCAGCTTCCCTACTATGATTTGGTGCCCTCGGATCCCTCCATAGAAGAGATGAGGAAGGTGGTTTGTGACCAGAGACTACGGCCCAATGTGCCCAACTGGTGGCAGAGCTACGAGGCGCTGAGAGTGATGGGGAAGATCATGCGGGAGTGTTGGTATGCCAACGGAGCGGCGCGGCTTACGGCTCTGCGGATTAAGAAGACTCTCTCGCAACTCAGCGTCCAAGAAGACATTAAGATCTGAAACACGTGGGACGCTGCAGATCCCCGCAGAGACGCACAAGCGAATAAA
>TU22653
AAAATTTTCATTTTTGGGTGAACTATCATTTTAAATGTGTTTTTGAGCATTAACATGTAGTAGTAAAACTTTTATCCACTAGAGGGCATCATTAATGGCTCTGAAAGTGTAACATTAGGTTCTTTTTGCCTCTTTGTTTTTCCCATAGACTGATCTGAGTAAACTGTGCCACAACCTGATCTGGTTAATGAATACAATGTTACTTCAGTAGTCCTAAAGGAGATATAAGGGATCTATTTCCTTTTGCCTCAATCCAATTCTTGTAAACCATAAACAATGTGTATCCTGTCTTACAAGCCATGCAATCTCGCAATTGTTAGAATCGTTGTTCGGCACAAGAGACACTATAGGACCTGATACCCCTCTGGAGCTACCAAGACACACCTCGGTGTTGTTGAACAACATTTCACGGATACAATACTGAATGCATCCTTCACGATCATGTTTCAGACAGACCTATATTTACCCGTCGCAAATAGATATATCACGTATCTTATTCATAGAAATGAGACTGCCAAATGGGTGTCTTTCCAGTATAAATCCCTTCCTACGCACACCAACACGCAGAGAAGGCCAAAAGAGCAGATGCTCCACTGATTGATGGATATTTATAAGATGTTTATCTCGTTTTTTTCCCCAAGCCAAAGTTTCCCTGTGTTTGTCTTGCTGTCAGACTGTATGGCGGTGTGAGAGGATGGGCATTGATTTCTGTCTGCCTGTTTATCTATATCAGCGCCCTTGCTATATCCATCTGTGGAGGAGCACAGAGAGGGGGCTTTGCCGGAGATAATTCCCCAACTCTGCCTGTCCGGTCAGATGGAGAGAGGGTTATTTTTAACAGAGCACAGCGGCTGAGTGGAGTATCAATGCCCTGCTCTGGTAGGCCAGACTCCTCTGAAATGGTGCCCTTCTATCAGCTGTGACATTTTTACACAGAATGGACCCATTCCCGATGTCATTGTTTGGAATAATCGGATATAAACGCCCAGCTGAAATATGTCGAATGGTAATTGAGTGATATGACCCCACTTTATAGACAATAGACAGTCAGGGGCCAGATTACTATGTAGTCTAGCAAAAACAAAGAGGTTAATGGTAACAATAGAGGTTTAAGTCTGCAGACCGCAACTCTAAATGCTTTGTATTTGACCTTTGCATTGAGAGTAACTTGAAAGGAATTTCAGTGTAATTAGATTAGATCTTGTACATCATTCTTTATGTACCCATACGGCTTAATGCACTAACCGAGACTCTCCTCGTGTCATGTGGCCATTAAGAGGACAAATAGTGAGCGCATCAAATGTCTCTTTATTCCTCAAAATTAAAATCACAAGTTTCCATCTGCCCTGCTATTTAGAGGAAGTAAACATCCTGAGGTCCTGGCAGAAGCAAGAGCGCTCCTATAGGAATATGTTTGACTTCTTTTCCTTAAGACACAGTTTCCTTTTTCATACTAGATGAAGTCAAGGACTTTGTCAATGTTATTTTTTTTTATGTAATCAGGGATTTTTTATTGAGGGTCTGAGGTCTCTAAAGCTTAACCCATACTGTTGTTTTCGTGGGAGTCCTGAATGCTGCTCACAGGGGTTCTGTAAGCTCCTTTGGATCACACATGTCACACAATGTGGGTCCTACTCACAAAGGTAACTTTGGCTCCAGAGTCATATTGATGCTGAGACTCTGGAGAATAGAGAACACCACCTGCTGGTCCACTACAAAGACATGACCTGCAAATCTGTCACTGCTTTCATACACATCAGACCTATATATATATATAACATTCTCTGATAATGAATATATGTGAAAAGGACATATGATTTTTAAGAGGCAATTTCTTCCATGATCTGGATATTATATTTATTAATTTGGATTTTAACTTGTCCC

Function

symbol description
acvr1ba Predicted to enable activin binding activity and activin receptor activity, type I. Acts upstream of or within dorsal/ventral pattern formation; fin regeneration; and formation of primary germ layer. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including DEL; blastodisc; germ ring; margin; and presumptive shield. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ACVR1B (activin A receptor type 1B).
acvr1bb Predicted to enable activin binding activity and activin receptor activity, type I. Predicted to be involved in several processes, including activin receptor signaling pathway; cellular response to growth factor stimulus; and protein phosphorylation. Predicted to act upstream of or within phosphorylation and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ACVR1B (activin A receptor type 1B).
acvr1b Enables several functions, including ATP binding activity; activin receptor activity, type I; and inhibin binding activity. Contributes to activin binding activity; activin-activated receptor activity; and growth factor binding activity. Involved in several processes, including cell surface receptor signaling pathway; positive regulation of erythrocyte differentiation; and protein phosphorylation. Located in cell surface and cytosol. Is integral component of plasma membrane. Part of activin receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic cancer.

GO:

id name namespace
GO:0018107 peptidyl-threonine phosphorylation biological_process

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10638148_10656332.mRNA False 2553 mRNA 0.50 13 10638100 10656704
TU22653 True 1884 lncRNA 0.40 1 10655386 10657269

Neighbor

gene id symbol gene type direction distance location
CI01000001_10556067_10557569 DNAJC22 coding downstream 79565 10556004 ~ 10558535 (-)
CI01000001_10542497_10550979 IKZF4 coding downstream 87121 10540670 ~ 10550979 (-)
CI01000001_10513629_10520878 WNT10B coding downstream 117046 10513563 ~ 10521054 (-)
CI01000001_10503104_10506678 ARF2B, ARF3A, ARF2A, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF5.L coding downstream 129765 10502661 ~ 10508335 (-)
CI01000001_10487487_10496560 PHF8 coding downstream 141540 10487225 ~ 10496560 (-)
CI01000001_10658398_10672912 ACVRL1 coding upstream 1688 10658392 ~ 10673477 (-)
CI01000001_10676846_10683262 ANKRD33AA coding upstream 19818 10676522 ~ 10684044 (-)
CI01000001_10783090_10786991 NA coding upstream 126146 10782850 ~ 10786991 (-)
CI01000001_10798413_10798703 NA coding upstream 141625 10798329 ~ 10798933 (-)
CI01000001_10822800_10843434 NA coding upstream 165976 10822680 ~ 10843434 (-)
G20168 NA non-coding downstream 52095 10585802 ~ 10586005 (-)
G20156 NA non-coding downstream 76120 10561635 ~ 10561980 (-)
G20153 NA non-coding downstream 82793 10554008 ~ 10555307 (-)
G20136 NA non-coding downstream 98250 10539027 ~ 10539850 (-)
G20183 NA non-coding upstream 116504 10773208 ~ 10776468 (-)
G20180 NA non-coding upstream 122416 10779120 ~ 10781018 (-)
G20237 NA non-coding upstream 165343 10822047 ~ 10834168 (-)
G20268 NA non-coding upstream 217252 10873956 ~ 10874264 (-)
CI01000001_09804494_09811219 NA other downstream 817204 9804429 ~ 9811219 (-)
G18223 NA other downstream 2709583 7926104 ~ 7928517 (-)
G18023 NA other downstream 2880580 7756501 ~ 7757520 (-)
G17911 NA other downstream 3384846 7251311 ~ 7267952 (-)
CI01000001_10862471_10864514 NA other upstream 205521 10862225 ~ 10865770 (-)
G20230 NA other upstream 365423 11022127 ~ 11028777 (-)
G20319 NA other upstream 454133 11110837 ~ 11114747 (-)
G20315 NA other upstream 463448 11116755 ~ 11120830 (-)
CI01000001_12878462_12899012 NA other upstream 2216694 12878365 ~ 12899469 (-)

Expression


Co-expression Network